Beauchamp:Lab Notebook

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Revision as of 16:50, 27 August 2010 by Michael S Beauchamp (Talk | contribs)
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Brain picture
Beauchamp Lab

  1. How To Install Software and set up new computers
  2. Notes on analyzing MRI data (old)



  1. Overview of fMRI Analysis
  2. Software Information Page
  3. Motion and Distortion Correction
  4. Autism Data
  5. Finding Distances on the Surface
  6. Finding Closest node on the Surface
  7. Creating AFNI BRIKs from MR Data
  8. Preparation for Creating Cortical Surface Models
  9. Creating Cortical Surface Models
  10. Using Cortical Surface Models
  11. What If a Cortical Surface Model Exists Already
  12. What If Cortical Surface Model Looks Bad
  13. Creating Standardized Surface Models
  14. FreeSurfer Standard Surface Models
  15. Creating Volume Average Datasets with AFNI
  16. Processing Diffusion Tensor Imaging Data
  17. Automatic VOI Initialization for Interactive Tractography
  18. Deterministic Tractography Constrained by Image Masks
  19. AFNI
  20. SUMA
  21. Free Surfer
  22. Caret
  23. Scanner Stimulus and Eye Tracker Setup
  24. Retinotopic Mapping
  25. AFNI Atlas Values
  26. Tactile Experiment Notes
  27. MVPA Notes
  28. RealTimefMRI
  29. Electrode Localization and Naming


  1. Notes on TMS


Electrophysiology Protocols

Analyzing ECoG data (by Adam Burch)


New Auditory Tactile Experiment

d' (d-prime) Analysis

Race Model Analysis


  1. How To order things for the lab

McGurk Stimuli

McGurk Stimuli
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