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| {{Template:Dahlquist}} | | {{Template:Dahlquist}} |
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| This information can also be found at the Dahlquist Lab [http://myweb.lmu.edu/kdahlqui/Courses.htm Courses] page at Loyola Marymount University.
| | For a complete list of courses taught by Dr. Dahlquist, please visit the Dahlquist Lab [http://kdahlquist.github.io/DahlquistLab/courses.htm Courses] page at Loyola Marymount University. This list is comprised of courses that are hosted by Open WetWare. |
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| == Fall 2013 Courses == | | == Bioinformatics Laboratory == |
| === Biology 201: Cell Function ===
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| Section BIOL 201-03: MWF 11:00-11:50 AM, Doolan 222
| | * [[BIOL368/S20 | Biology 368: Bioinformatics Laboratory Spring 2020]] |
| | * [[BIOL368/F16 | Biology 368: Bioinformatics Laboratory Fall 2016]] |
| | * [[BIOL368/F14 | Biology 368: Bioinformatics Laboratory Fall 2014]] |
| | * [[BIOL368/F11 | Biology 368: Bioinformatics Laboratory Fall 2011]] |
| | * [[BIOL398-01/S10 | Biology 398-01: Bioinformatics Laboratory Spring 2010]] |
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| Section BIOL 201-04: MWF 12:00-12:50 PM, Doolan 222
| | == Biomathematical Modeling == |
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| Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.
| | * [[BIOL388/S19 | Biology 388-01: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics Spring 2019]] |
| | * [[BIOL398-05/S17 | Biology 398-05: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics Spring 2017]] |
| | * [[BIOL398-04/S15 | Biology 398-04: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics Spring 2015]] |
| | * [[BIOL398-03/S13 | Biology 398-03: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics Spring 2013]] |
| | * [[BIOL398-01/S11 | Biology 398-01: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics Spring 2011]] |
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| Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
| | == Biological Databases == |
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| === Biology/Computer Science 367/Honors 398: Biological Databases ===
| | * [[BIOL367/F10 | Biology / Computer Science 367-01/ Honors 398-05: Biological Databases Fall 2010 partial site on this wiki]] |
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| TR 9:25-10:40 AM: Doolan 219
| | == Cell Function == |
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| [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/Main_Page Course web site and public wiki] | | * [[BIOL201/F10 | Biology 201-01, -02: Cell Function Protein Structure Exploration exercises]]. NOTE: these were under construction. |
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| == Spring 2013 Courses == | | == Issues in Biotechnology == |
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| === Biology 398-03: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics ===
| | * [[Dahlquist:Hwang Stem Cell Fraud Case Bibliography | Hwang Stem Cell Fraud Case Bibliography]] |
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| TR 9:25 - 10:40 AM, Seaver 120
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| [[BIOL398-03/S13 | BIOL398-03/S13 site on this wiki]]
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| === Biology 478: Molecular Biology of the Genome ===
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| == Fall 2011 Courses ==
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| === Biology 201: Cell Function ===
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| Section BIOL 201-01: MWF 9:00-9:50 AM, Pereira 140
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| Section BIOL 201-03: MWF 10:00-10:50 PM, Pereira 207
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| Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.
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| Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
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| === Biology 368: Bioinformatics Laboratory ===
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| Section BIOL 368-01: W 1:00-4:50 PM, Seaver 120
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| [[BIOL368/F11 | BIOL368/F11 site on this wiki]]
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| == Previous Courses ==
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| * '''Spring 2011 Courses'''
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| ** Biology 398-01: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics
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| *** [[BIOL398-01/S11 | BIOL398-01/S11 site on this wiki]]
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| * '''Fall 2010 Courses'''
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| ** Biology 201-01, -02: Cell Function
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| *** Protein Structure Exploration exercises are hosted [[BIOL201/F10 | here on this wiki]]. NOTE: these are currently under construction.
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| ** Biology / Computer Science 367-01/ Honors 398-05: Biological Databases
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| *** [https://www.cs.lmu.edu/biodb/fall2010 Course wiki on the CS network]
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| *** [[BIOL367/F10 | BIOL367/F10 site on this wiki]]
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| * '''Spring 2010 Courses'''
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| ** Biology 398-01: Bioinformatics Laboratory
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| *** See [[BIOL398-01/S10 | BIOL398-01/S10 site on this wiki]].
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| ** Biology 478: Molecular Biology of the Genome
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| * '''Fall 2009 Courses'''
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| ** Biology 201-01, -02: Cell Function
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| ** Biology / Computer Science / Honors 398-01: Biological Databases
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| *** [https://www.cs.lmu.edu/biodb/fall2009/index.php/Main_Page Course wiki] (for students in the course only).
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| * '''Spring 2009 Courses'''
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| ** Biology 478: Molecular Biology of the Genome
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| ** Honors 240-01: On the Nature of Things
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| ***[http://sites.google.com/site/lmuonthenatureofthingsspr09/ Course Google Site] (for students in the course only).
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| * '''Fall 2008 Courses'''
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| ** Biology 201-01: Cell Function
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| ** Biology / Computer Science / Honors 398-01: Biological Databases
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| *** [http://myweb.lmu.edu/dondi/fall2008/cmsi398/ Course web site]
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| ** Biology 398-01: Bioinformatics Laboratory
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| *** [http://sites.google.com/site/lmubioinformaticslabfall2008/Home Course Google Site] (for students in the course only).
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| == Problem Space: Analysis of Prostate Cancer DNA Microarray Data ==
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| * GenMAPP and MAPPFinder are available from [http://www.genmapp.org http://www.genmapp.org]
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| * Data for this exercise was published in this paper: <biblio>#Paper1 pmid=12154061</biblio>
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| * Review article on prostate cancer: <biblio>#Paper2 pmid=12878745</biblio>
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| * [[Media:BIOL398-01_GenMAPP_ExpressionDatasetManager_20081023.pdf | GenMAPP Prostate Cancer Exercise Part 1]]
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| ** This is the link to the data file, [[Media:Hs_ED_ProstateCancer_edited.txt | <Hs_ED_ProstateCancer_edited.txt>]], mentioned in step 3 of the protocol.
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| * [[Media:BIOL398-01_MAPPFinder_20081021.pdf | GenMAPP Prostate Cancer Exercise Part 2 (MAPPFinder)]]
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| ** This part of the exercise can be completed independently of Part 1 by downloading the GenMAPP Expression Dataset <Hs_ED_ProstateCancer_20060130.gex> from GenMAPP.org using the Data Acquisition Tool from within the GenMAPP program.
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| *# Launch GenMAPP.
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| *# Select the menu item, Data > Download Data from GenMAPP.org
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| *# Expand the "Expression Datasets" folder, and click on "Homo sapiens" to see the file.
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| *# Check the box next to the filename.
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| *# Click the Start button to download.
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| [[Category:Lab]] | | [[Category:Lab]] |