Dahlquist:Publications

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1. Dionisio, JDN and Dahlquist, KD Improving the Computer Science in Bioinformatics Through Open Source Pedagogy SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 Abstract [Paper1]
2. Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, and Pico AR. GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics 2007 Jun 24; 8 217. doi:10.1186/1471-2105-8-217 pmid:17588266. PubMed HubMed PubGet [Paper2]
3. Dahlquist KD. Using GenMAPP and MAPPFinder to view microarray data on biological pathways and identify global trends in the data. Curr Protoc Bioinformatics 2004 May; Chapter 7 Unit 7.5. doi:10.1002/0471250953.bi0705s05 pmid:18428731. PubMed HubMed PubGet [Paper3]
4. Segal MR, Dahlquist KD, and Conklin BR. Regression approaches for microarray data analysis. J Comput Biol 2003; 10(6) 961-80. doi:10.1089/106652703322756177 pmid:14980020. PubMed HubMed PubGet [Paper4]
5. Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, and Conklin BR. MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol 2003; 4(1) R7. pmid:12540299. PubMed HubMed PubGet [Paper5]
6. Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, and Conklin BR. GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet 2002 May; 31(1) 19-20. doi:10.1038/ng0502-19 pmid:11984561. PubMed HubMed PubGet [Paper6]
7. Dahlquist KD and Puglisi JD. Interaction of translation initiation factor IF1 with the E. coli ribosomal A site. J Mol Biol 2000 May 26; 299(1) 1-15. doi:10.1006/jmbi.2000.3672 pmid:10860719. PubMed HubMed PubGet [Paper7]
8. Recht MI, Douthwaite S, Dahlquist KD, and Puglisi JD. Effect of mutations in the A site of 16 S rRNA on aminoglycoside antibiotic-ribosome interaction. J Mol Biol 1999 Feb 12; 286(1) 33-43. doi:10.1006/jmbi.1998.2446 pmid:9931247. PubMed HubMed PubGet [Paper8]
9. Recht MI, Fourmy D, Blanchard SC, Dahlquist KD, and Puglisi JD. RNA sequence determinants for aminoglycoside binding to an A-site rRNA model oligonucleotide. J Mol Biol 1996 Oct 4; 262(4) 421-36. doi:10.1006/jmbi.1996.0526 pmid:8893854. PubMed HubMed PubGet [Paper9]
10. Dahlquist K and Puglisi JD. Investigating the structure and function of translation initiation factor 1 in Escherichia coli. Nucleic Acids Symp Ser 1995 170-1. pmid:8643361. PubMed HubMed PubGet [Paper10]