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| {{Ellis Top}}
| | our lab website has now moved to http://tomellislab.com/ |
| '''Click the links to read our papers'''
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| <font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications. '''Latest Update: FEB 2012'''
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| <br>
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| {| border="1" cellpadding="4" cellspacing="0" style="border:#c9c9c9 1px solid; margin: 1em 1em 1em 0; border-collapse: collapse; width:720px" <!-- This line here formats your table for you. Change the code to change the formatting of your table.-->
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| ! || Title !! Authors !! Published !! PDF !! Screenshot
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| ! Synthetic Biology Research
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| | Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology
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| | '''Blount BA, Weenink T, Vasylechko S, Ellis T'''
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| | '''PLoS One''', March 2012 [http://openwetware.org/images/0/0e/DraftTALORs.pdf DOI Link]
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| | [http://openwetware.org/images/0/0e/DraftTALORs.pdf View PDF]
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| | [[Image:TALORs.jpg|160px|right|PLos One]]
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| ! Synthetic Biology Reviews
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| | Construction of synthetic regulatory networks in yeast
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| | '''Blount BA, Weenink T, Ellis T'''
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| | '''FEBS Letters''', Feb 2012 [http://dx.doi.org/10.1016/j.febslet.2012.01.053 DOI Link]
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| | [http://openwetware.org/images/c/cd/FEBSEllis.pdf View PDF]
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| | [[Image:YSRNreview.jpg|160px|right|FEBS Letters]]
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| !
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| | DNA assembly for synthetic biology: from parts to pathways and beyond
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| | '''Ellis T''', Adie T, Baldwin GS
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| | '''Integrative Biology''', Feb 2011, Vol 3, Page 109 [http://dx.doi.org/10.1039/c0ib00070a DOI Link]
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| | [http://openwetware.org/images/2/2e/EllisAssembly.pdf View PDF]
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| | [[Image:SynBioAssembly.jpg|160px|right|Integrative Biology]]
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| ! Synthetic Biology by Tom Ellis
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| | Diversity-based, model-guided construction of synthetic gene networks with predicted functions
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| | '''Ellis T''', Wang X, Collins JJ
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| | '''Nature Biotechnology''', April 2009, Vol 27, Page 465 [http://dx.doi.org/10.1038/nbt.1536 DOI Link]
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| | [http://openwetware.org/images/4/42/Biotech.pdf View PDF]
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| | [[Image:Biotech.jpg|160px|right|Nature Biotech]]
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| !
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| | Gene regulation: hacking the network on a sugar high
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| | '''Ellis T''', Wang X, Collins JJ
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| | '''Molecular Cell''', 2008, Vol 30, Page 1 [http://dx.doi.org/10.1016/j.molcel.2008.03.005 DOI Link]
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| | [http://openwetware.org/images/1/12/MolCell.pdf View PDF]
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| | [[Image:Mol_Cell.jpg|160px|right|Mol Cell]]
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| !
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| | Synthesis and screening of regulatory component libraries for synthetic biology
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| | '''Ellis T'''
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| | '''Nature Protocols''', April 2009 [http://www.nature.com/protocolexchange/protocols/561 DOI Link]
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| | [http://openwetware.org/images/9/94/Protocol.pdf View PDF]
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| | [[Image:ProtocolTom.jpg|160px|right|Nature Protocols]]
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| ! Previous Publications by Tom Ellis
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| | Novel C8-linked pyrrolobenzodiazepine (PBD)-heterocycle conjugates that recognize DNA sequences containing an inverted CCAAT box
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| | Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, '''Ellis T''', Hartley JA, Howard PW, Thurston DE
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| | '''Bioorg Med Chem Letters''', 2011, Vol 21, Page 3780 [http://dx.doi.org/10.1016/j.bmcl.2011.04.054]
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| | [http://openwetware.org/images/7/7d/PBDpaper.pdf View PDF]
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| | [[Image:PBDfootprint.jpg|160px|right|Bioorg Med Chem Lett]]
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| !
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| | Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties
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| | Van Vliet LD, '''Ellis T''', Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ
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| | '''Journal of Medicinal Chemistry''', 2007, Vol 50, Page 2326 [http://dx.doi.org/10.1021/jm0613020 DOI Link]
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| | [http://openwetware.org/images/b/bd/MOLRAC.pdf View PDF]
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| | [[Image:MOLRAC.jpg|160px|right|J Med Chem]]
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| !
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| | A 96-well DNase I footprinting screen for drug-DNA interactions
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| | '''Ellis T''', Evans DA, Martin CR, Hartley JA
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| | '''Nucleic Acids Research''', 2007, Vol 35 [http://dx.doi.org/10.1093/nar/gkm467 DOI Link]
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| | [http://openwetware.org/images/6/62/Footprinting.pdf View PDF]
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| | [[Image:96wellFootprint.jpg|160px|right|NAR]]
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| !
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| | Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies
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| | Martin C, '''Ellis T''', McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE
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| | '''Biochemistry''', 2005, Vol 44, Page 4135 [http://dx.doi.org/10.1021/bi0479813 DOI Link]
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| | [http://openwetware.org/images/1/18/SJG-136.pdf View PDF]
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| | [[Image:SJG136.jpg|160px|right|Biochemistry]]
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| !
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| | DNase I footprinting of small molecule binding sites on DNA
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| | Bailly C, Kluza J, Martin C, '''Ellis T''', Waring MJ
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| | '''Methods in Molecular Biology''', 2005, Vol 288, Page 319 [http://dx.doi.org/10.1385/1-59259-823-4:319 DOI Link]
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| | Book Chapter
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| | [[Image:DNaseI.jpg|160px|right|Meth Mol Biol]]
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| |}
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