Endy:Reprints: Difference between revisions
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''Tools and reference standards supporting the engineering and evolution of synthetic biological systems''<br> | ''Tools and reference standards supporting the engineering and evolution of synthetic biological systems''<br> | ||
MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44917/301953777.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/44917<br> | MIT PhD, 2008 [http://dspace.mit.edu/bitstream/handle/1721.1/44917/301953777.pdf?sequence=1 dissertation] (PDF), doi: 1721.1/44917<br> | ||
'''Nicolas Koutsoubelis'''<br> | |||
''Quantitative in silico and in vivo characterization of the recombinase addressable data storage''<br> | |||
University of Freiburg Bachelor's [[Media:Koutsoubelis BS Thesis Stanford Freiburg.pdf | thesis]] (PDF)<br> | |||
'''Sriram Kosuri'''<br> | '''Sriram Kosuri'''<br> | ||
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===Peer Reviewed Research Articles=== | ===Peer Reviewed Research Articles=== | ||
'''Living digital logic via engineered genetic transistors'''<br> | |||
In review<br> | |||
''Jerome Bonnet et al.''<br> | |||
'''Precise and reliable gene expression engineering via active coupling and genetic nesting'''<br> | '''Precise and reliable gene expression engineering via active coupling and genetic nesting'''<br> | ||
''Nature Methods,'' in | ''Nature Methods,'' in revision<br> | ||
Vivek Mutalik et al.<br> | Vivek Mutalik et al.<br> | ||
[http://www.nature.com URL pending] [http://www.nature.com/| PDF reprint pending] | [http://www.nature.com URL pending] [http://www.nature.com/| PDF reprint pending] | ||
'''Composition and quality of irregular genetic elements controlling transcription and translation'''<br> | '''Composition and quality of irregular genetic elements controlling transcription and translation'''<br> | ||
''Nature Methods,'' in | ''Nature Methods,'' in revision<br> | ||
Vivek Mutalik et al.<br> | Vivek Mutalik et al.<br> | ||
[http://www.pnas.org URL pending] [http://www.pnas.org/| PDF reprint pending] | [http://www.pnas.org URL pending] [http://www.pnas.org/| PDF reprint pending] | ||
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''Virology,'' published online 15 October 2012, doi: 10.1016/j.virol.2012.09.020<br> | ''Virology,'' published online 15 October 2012, doi: 10.1016/j.virol.2012.09.020<br> | ||
Paul Jaschke, Erica Lieberman, Jon Rodriguez, Adrian Sierra, [[Drew Endy]]<br> | Paul Jaschke, Erica Lieberman, Jon Rodriguez, Adrian Sierra, [[Drew Endy]]<br> | ||
[http://www.sciencedirect.com/science/article/pii/S0042682212004618# URL] [[Media: PDF reprint]] | [http://www.sciencedirect.com/science/article/pii/S0042682212004618# URL] [[Media:PhageInYeast.pdf | PDF reprint]] | ||
'''Engineered cell-cell communication via DNA messaging'''<br> | '''Engineered cell-cell communication via DNA messaging'''<br> |
Revision as of 09:57, 26 November 2012
Student DissertationsBarry Canton Jeff Gritton Jason Kelly Nicolas Koutsoubelis Sriram Kosuri Alex Mallet Reshma Shetty (co-advisee with Tom Knight Francois St-Pierre Samantha Sutton Ty Thompson Peer Reviewed Research ArticlesLiving digital logic via engineered genetic transistors Precise and reliable gene expression engineering via active coupling and genetic nesting Composition and quality of irregular genetic elements controlling transcription and translation A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast Engineered cell-cell communication via DNA messaging Refactored M13 bacteriophage as a platform for tumor cell imaging and drug delivery Rewritable digital data storage in live cells via engineered control of recombination directionality Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression Measuring the activity of BioBrick promoters using an in vivo reference standard Determination of cell fate selection during phage lambda infection Refinement and standardization of synthetic biological parts and devices Engineering BioBrick vectors from BioBrick parts Stimulus design for model selection and validation in cell signaling TABASCO: A single molecule, base-pair resolved gene expression simulator DNA synthesis and biological security Synthetic genomics: Options for governance Foundations for engineering biology Refactoring bacteriophage T7 Regulated cell to cell variation in a cell fate decision system Modelling cellular behaviour (insight feature) Computation, prediction, and experimental test of fitness for bacteriophage T7 mutants with permuted genomes Toward antiviral strategies that resist viral escape Intracellular kinetics of a growing virus: A genetically-structured simulation for bacteriophage T7 Transcribed LecturesSynthetic biology: Can we make biology easy to engineer? <--note: transcription was not proofed Other Articles, Not Peer ReviewedCribsheet #16: Synthetic Biology Reconstruction of the genomes Building a fab for biology A biological engineer searches for simplicity Useful construction 2003 Synthetic Biology study Molecular monogamy Decoding NF-kB signaling A standard parts list for biological circuitry BooksAdventures in synthetic biology Edited Book ChaptersSynthetic Biology Towards a predictive biology: The example of bacteriophage T7 Selected Online Lectures or DebatesSynthetic Biology Debate with Jim Thomas, moderated by Stewart Brand Programming DNA: A 2-bit language for engineering biology |