Harvard:Biophysics 101/2007:Python

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*[http://numpy.scipy.org/#older_array Numeric 24.2] ([http://biopython.org/DIST/Numeric-24.2.win32-py2.5.exe direct link to Windows installer])
*[http://numpy.scipy.org/#older_array Numeric 24.2] ([http://biopython.org/DIST/Numeric-24.2.win32-py2.5.exe direct link to Windows installer])
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'''Installation'''
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'''Windows Installation'''
*[http://biopython.org/wiki/Download Download & Install BioPython]
*[http://biopython.org/wiki/Download Download & Install BioPython]
**[http://biopython.org/DIST/biopython-1.42.win32-py2.5.exe direct link to BioPython Windows installer]
**[http://biopython.org/DIST/biopython-1.42.win32-py2.5.exe direct link to BioPython Windows installer]
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'''OS X Installation'''
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*Install xcode tools (either download ~1GB from the [http://developer.apple.com/tools/download/ developer site]) or install from the OS X installation DVD.
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*Download the three dependencies and extract them (double click on the file, or use "tar -xzf filename.tar.gz" for tar.gz files, or "tar -xf filename.tar")
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**http://www.egenix.com/files/python/egenix-mx-base-2.0.6.tar.gz
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**http://downloads.sourceforge.net/numpy/Numeric-24.2.tar.gz                                         
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**http://www.reportlab.org/ftp/ReportLab_2_0.tgz
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*For each of the three packages, use a terminal window (/Applications/Utilities/Terminal) to enter the package directory (created when you extracted the files) and run the following commands:
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<pre>
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python setup.py build
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python setup.py install
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</pre>
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*Download and extract [http://biopython.org/wiki/Download BioPython] source file
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**http://biopython.org/DIST/biopython-1.42.tar.gz
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*From the extracted directory, run the following commands:
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<pre>
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python setup.py build
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python setup.py test
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python setup.py install
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</pre>
'''Documentation'''
'''Documentation'''

Revision as of 13:40, 6 February 2007

Biophysics 101: Genomics, Computing, and Economics

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Python

Installation

Documentation

BioPython

Pre-installation dependencies

Windows Installation

OS X Installation

python setup.py build
python setup.py install
python setup.py build
python setup.py test
python setup.py install

Documentation

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