Harvard:Biophysics 101/2007:Python: Difference between revisions
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*[http://diveintopython.org/toc/index.html Dive Into Python] (for experienced programmers) | *[http://diveintopython.org/toc/index.html Dive Into Python] (for experienced programmers) | ||
*[http://docs.python.org/tut/tut.html Python Tutorial] | *[http://docs.python.org/tut/tut.html Python Tutorial] | ||
*[http://www.python.org/doc/2.4.1/lib/lib.html Python Lib Ref] | |||
*[http://www.python.org/dev/peps/pep-0008/ Python Style Guide] | |||
*[http://wiki.python.org/moin/PerlPhrasebook Perl-to-Python] | *[http://wiki.python.org/moin/PerlPhrasebook Perl-to-Python] | ||
*[http://www.amk.ca/python/howto/regex/ Py Reg Ex] (regular expressions) | |||
*[http://www.amk.ca/python/howto/regex/ Py Reg Ex] | |||
==BioPython== | ==BioPython== | ||
Revision as of 19:58, 9 February 2007
Python
Installation
Documentation
- Beginner's Guide (includes instructions for non-programmers)
- Learning Python (Online textbook for beginners)
- Dive Into Python (for experienced programmers)
- Python Tutorial
- Python Lib Ref
- Python Style Guide
- Perl-to-Python
- Py Reg Ex (regular expressions)
BioPython
Pre-installation dependencies
- Python (see above)
- mxTextTools (direct link to Windows installer)
- Numeric 24.2 (direct link to Windows installer)
Windows Installation
OS X Installation
- Install xcode tools (either download ~1GB from the developer site) or install from the OS X installation DVD.
- Download the three dependencies and extract them (double click on the file, or use "tar -xzf filename.tar.gz" for tar.gz files, or "tar -xf filename.tar")
- For each of the three packages, use a terminal window (/Applications/Utilities/Terminal) to enter the package directory (created when you extracted the files) and run the following commands:
python setup.py build python setup.py install
- Download and extract BioPython source file
- From the extracted directory, run the following commands:
python setup.py build python setup.py test python setup.py install
Documentation
