IGEM:IMPERIAL/2009/Encapsulation/Biobricks: Difference between revisions

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==Module 3==
==Module 3==
[[Media:BB_new M3.docx | Module 3 (provisional) biobricks]]
[[Media:BB_new M3 table.docx | Module 3 biobricks]]


==Module Timer==
==Module Timer==
Line 16: Line 16:


<i>Table 1. Biobricks we need from the registry</i>
<i>Table 1. Biobricks we need from the registry</i>
===Promoters===


<table border=1>
<table border=1>
Line 31: Line 34:


<tr>
<tr>
<td>1</td>
<td>M1</td>
<td>LacIQ promoter</td>
<td>Inducible (IPTG)</td>
<td>BBa_K091111</td>
<td>BBa_R0011</td>
<td>Shipment: 00352 ID:941 Davidson</td>
<td>2</td>
<td>pSB1A2</td>
<td>A</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K091111 LacIQ promoter]</td>
</tr>
 
<tr>
<td>1,2,3</td>
<td>RBS</td>
<td>BBa_B0034</td>
<td>KP1 2009</td>
<td>2M</td>
<td>pSB1A2</td>
<td>A</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_B0034 RBS]</td>
</tr>
 
 
<tr>
<td>1,2,3</td>
<td>Double terminator</td>
<td>BBa_B0015</td>
<td>KP1 2009</td>
<td>23L</td>
<td>pSB1AK3</td>
<td>AK</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_B0015 Double terminator]</td>
</tr>
 
 
<tr>
<td>1,2,3</td>
<td>GFP generator</td>
<td>BBa_E0240</td>
<td>KP1 2009</td>
<td>KP1 2009</td>
<td>12M</td>
<td>6G</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_E0240 GFP generator]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_R0011 Inducible (IPTG)]</td>
</tr>
</tr>


<tr>
<tr>
<td>1,2,3</td>
<td>M2</td>
<td>Variable input (testing)</td>
<td>Inducible (cAMP)</td>
<td>BBa_F2620</td>
<td>BBa_K118011</td>
<td>KP2 2009</td>
<td>KP2 2009</td>
<td>6E</td>
<td>18D</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_F2620 Variable input]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K118011 Inducible (cAMP)]</td>
</tr>
</tr>


<tr>
<tr>
<td>3</td>
<td>M3</td>
<td>Constitutive promoter</td>
<td>Constitutive</td>
<td>BBa_J23114</td>
<td>BBa_J23114</td>
<td>KP1 2009</td>
<td>KP1 2009</td>
Line 105: Line 70:


<tr>
<tr>
<td>3</td>
<td>M3</td>
<td>Constitutive promoter</td>
<td>Constitutive</td>
<td>BBa_J23103</td>
<td>BBa_J23103</td>
<td>KP2 2009</td>
<td>KP1 2009</td>
<td>18I</td>
<td>18I</td>
<td>BBa_J61002</td>
<td>BBa_J61002</td>
Line 117: Line 82:


<tr>
<tr>
<td>3</td>
<td>M3</td>
<td>Promoter (lambda cI regulated)</td>
<td>Repressible (lambda cI)</td>
<td>BBa_R0051</td>
<td>BBa_R0051</td>
<td>KP1 2009</td>
<td>KP1 2009</td>
<td>6E</td>
<td>6K</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
Line 129: Line 94:


<tr>
<tr>
<td>3</td>
<td>M3-Testing</td>
<td>cI QPI with high promoter (heat sensitive)</td>
<td>Inducible(Arabinose)</td>
<td>BBa K098995</td>
<td>BBa_I0500</td>
<td>KP3 2009</td>
<td>KP1 2009</td>
<td>1E</td>
<td>14N</td>
<td>pSB2K3</td>
<td>K</td>
<td>Variable – IPTG results in high copy # (++100 per cell)</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_I0500 pBAD Promoter]</td>
</tr>
 
<tr>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</table><br>
<br>
 
 
===Ribosome Binding Sites===
 
 
<table border=1>
<tr>
<td><b>Module</b></td>
<td><b>Part</b></td>
<td><b>BB #</b></td>
<td><b>Kit</b></td>
<td><b>Well #</b></td>
<td><b>Plasmid</b></td>
<td><b>Resistance</b></td>
<td><b>Copy #</b></td>
<td><b>Link</b></td>
</tr>
 
<tr>
<td>M1,M2,M3</td>
<td>RBS</td>
<td>BBa_B0034</td>
<td>KP1 2009</td>
<td>2M</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K098995 cI QPI with high promoter ]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_B0034 RBS]</td>
</tr>
 
<tr>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</table><br>
<br>
 
 
===Terminators===
 
 
<table border=1>
<tr>
<td><b>Module</b></td>
<td><b>Part</b></td>
<td><b>BB #</b></td>
<td><b>Kit</b></td>
<td><b>Well #</b></td>
<td><b>Plasmid</b></td>
<td><b>Resistance</b></td>
<td><b>Copy #</b></td>
<td><b>Link</b></td>
</tr>
</tr>


<tr>
<tr>
<td>3</td>
<td>1,2,3</td>
<td>pBAD Promoter</td>
<td>Double terminator</td>
<td>BBa_I0500</td>
<td>BBa_B0015</td>
<td>KP1 2009</td>
<td>KP1 2009</td>
<td>14N</td>
<td>23L</td>
<td>pSB2K3</td>
<td>pSB1AK3</td>
<td>K</td>
<td>AK</td>
<td>Variable – IPTG results in high copy # (++100 per cell)</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_I0500 pBAD Promoter]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_B0015 Double terminator]</td>
</tr>
 
<tr>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</table><br>
<br>
 
 
===Composite Parts===
 
 
<table border=1>
<tr>
<td><b>Module</b></td>
<td><b>Part</b></td>
<td><b>BB #</b></td>
<td><b>Kit</b></td>
<td><b>Well #</b></td>
<td><b>Plasmid</b></td>
<td><b>Resistance</b></td>
<td><b>Copy #</b></td>
<td><b>Link</b></td>
</tr>
</tr>


<tr>
<tr>
<td>Timer</td>
<td>M1,M2,M3 (Testing)</td>
<td>Promoter(luxR & HSL regulated-lux pR)</td>
<td>GFP generator</td>
<td>BBa_R0062</td>
<td>BBa_E0240</td>
<td>KP1 2009</td>
<td>KP1 2009</td>
<td>6O</td>
<td>12M</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_R0062 lux pR]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_E0240 GFP generator]</td>
</tr>
</tr>


<tr>
<tr>
<td>Timer</td>
<td>M1,M2,M3 (Testing)</td>
<td>Assembly</td>
<td>GFP generator</td>
<td>BBa_S03119</td>
<td>BBa_I13504</td>
<td>KP1 2009</td>
<td>KP1 2009</td>
<td>10O</td>
<td>22I</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_S03119 Assembly]</td>
<td>[http://partsregistry.org/Part:BBa_I13504 GFP generator]</td>
</tr>
</tr>


<tr>
<tr>
<td>Timer</td>
<td>M1,M2,M3 (Testing)</td>
<td>LacI-LuxI</td>
<td>RFP generator</td>
<td>BBa_K084014</td>
<td>BBa_I13507</td>
<td>KP2 2009</td>
<td>KP1 2009</td>
<td>2B</td>
<td>22O</td>
<td>pSB1A2</td>
<td>pSB1A2</td>
<td>A</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K084014 LacI-LuxI]</td>
<td>[http://partsregistry.org/Part:BBa_I13507 RFP generator]</td>
</tr>
</tr>


<tr>
<tr>
<td>Timer</td>
<td>M1,M2,M3 (Testing)</td>
<td>LacI-LasI</td>
<td>Variable input (testing)</td>
<td>BBa_K084007</td>
<td>BBa_F2620</td>
<td>KP3 2009</td>
<td>KP2 2009 BB_Barry Box 1</td>
<td>12E</td>
<td>6E</td>
<td>pSB1AK3</td>
<td>pSB1A2</td>
<td>AK</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K084007 LacI-LasI]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_F2620 Variable input]</td>
</tr>
</tr>


<tr>
<tr>
<td>Timer</td>
<td>M3</td>
<td>Lac repressible RhlI generator</td>
<td>HARVARD - cI QPI with high promoter (heat sensitive)</td>
<td>BBa_K084008</td>
<td>BBa K098995</td>
<td>KP3 2009</td>
<td>KP3 2009</td>
<td>12C</td>
<td>1E</td>
<td>pSB1AK3</td>
<td>pSB1A2</td>
<td>AK</td>
<td>A</td>
<td>100-300</td>
<td>100-300</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K084008 Lac repressible RhlI generator]</td>
<td>[http://partsregistry.org/partsdb/get_part.cgi?part=BBa_K098995 cI QPI with high promoter ]</td>
</tr>
</tr>


<tr>
<tr>
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</tr>
</tr>
</table><br>
</table><br>
<br>
==Biobricks from MrGene==
<i>Table 1. Biobricks we need to synthesise.</i>
<br>
[[Image:BBsynthDpnII.jpg]]
<br>
[[Image:BBsynthTaqI.jpg]]
<br>
[[Image:BBsynthcI.jpg]]
<br>
<br>


==Biobricks==
==Biobricks==


''Under construction''


<table width="550" border=1>
<table width="550" border=1>
Line 238: Line 308:
<td width="45" align="center"><b>Stop?</b></td>
<td width="45" align="center"><b>Stop?</b></td>
<td width="45" align="center"><b>ORF</b></td>
<td width="45" align="center"><b>ORF</b></td>
<td width="45" align="center"><b>Sequence</b></td>
<td width="45" align="center"><b>References</b></td>
<td width="45" align="center"><b>References</b></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">1359bp (+1)</font></td>
<td align="center"><font color="green">1359bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">[[IGEM:IMPERIAL/2009/Encapsulation/PKU | PAH]]</font></td>
<td align="center"><font color="green">[[IGEM:IMPERIAL/2009/Encapsulation/PKU | PAH]]</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">2445bp (+1)</font></td>
<td align="center"><font color="green">2445bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">651bp (+1)</font></td>
<td align="center"><font color="green">651bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">483bp (+1)</font></td>
<td align="center"><font color="green">483bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">1260bp (+1)</font></td>
<td align="center"><font color="green">1260bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">1425bp (+1)</font></td>
<td align="center"><font color="green">1425bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">612bp (+1)</font></td>
<td align="center"><font color="green">612bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
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<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">837bp (+1)</font></td>
<td align="center"><font color="green">837bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
Line 355: Line 416:
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">777bp (+1)</font></td>
<td align="center"><font color="green">777bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>


<tr>
<tr>
<td align="center"><b><font color="red">Dpn2</font></b></td>
<td align="center"><b><font color="red">DpnII</font></b></td>
<td align="center"><font color="green">6029545</font></td>
<td align="center"><font color="green">6029545</font></td>
<td align="center"><font color="green">[http://www.ncbi.nlm.nih.gov/nuccore/NC_010380.1?report=fasta&from=1825422&to=1826288 Dpn2 #]</font></td>
<td align="center"><font color="green">[http://www.ncbi.nlm.nih.gov/nuccore/NC_010380.1?report=fasta&from=1825422&to=1826288 DpnII #]</font></td>
<td align="center"><font color="green">Strepococcus pneumoniae Hungary19A-6</font></td>
<td align="center"><font color="green">Strepococcus pneumoniae Hungary19A-6</font></td>
<td align="center"><font color="green">0 and 0</font></td>
<td align="center"><font color="green">0 and 0</font></td>
Line 368: Line 428:
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">Yes</font></td>
<td align="center"><font color="green">867bp (+1)</font></td>
<td align="center"><font color="green">867bp (+1)</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
<td align="center"><font color="green">Add</font></td>
</tr>
</tr>
Line 386: Line 445:
<td width="35" align="center"><b>OtsA</b></td>
<td width="35" align="center"><b>OtsA</b></td>
<td width="35" align="center"><b>OtsB</b></td>
<td width="35" align="center"><b>OtsB</b></td>
<td width="35" align="center"><b>TaqI</b></td>
<td width="35" align="center"><b>DpnII</b></td>
</tr>
</tr>


Line 391: Line 452:
<td align="center"><b><font color="red">EcoRI</font></b></td>
<td align="center"><b><font color="red">EcoRI</font></b></td>
<td align="center"><font color="green"><font color="green">No</font></font></td>
<td align="center"><font color="green"><font color="green">No</font></font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
Line 401: Line 464:
<tr>
<tr>
<td align="center"><b><font color="red">SpeI</font></b></td>
<td align="center"><b><font color="red">SpeI</font></b></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
Line 413: Line 478:
<td align="center"><b><font color="red">XbaI</font></b></td>
<td align="center"><b><font color="red">XbaI</font></b></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
Line 427: Line 494:
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
Line 438: Line 507:
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="red">Yes</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
</tr>
</tr>
<tr>
<tr>
   <td align="center"><b><font color="orange">PvuII</font></b></td>
   <td align="center"><b><font color="orange">PvuII</font></b></td>
Line 451: Line 523:
   <td align="center"><font color="red">Yes</font></td>
   <td align="center"><font color="red">Yes</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
</tr>
</tr>
<tr>
<tr>
   <td align="center"><b><font color="orange">XhoI</font></b></td>
   <td align="center"><b><font color="orange">XhoI</font></b></td>
Line 461: Line 536:
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
</tr>
</tr>
<tr>
<tr>
   <td align="center"><b><font color="orange">AvrII</font></b></td>
   <td align="center"><b><font color="orange">AvrII</font></b></td>
Line 471: Line 549:
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
</tr>
</tr>
<tr>
<tr>
   <td align="center"><b><font color="orange">NheI</font></b></td>
   <td align="center"><b><font color="orange">NheI</font></b></td>
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   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
</tr>
</tr>
<tr>
<tr>
   <td align="center"><b><font color="orange">SapI</font></b></td>
   <td align="center"><b><font color="orange">SapI</font></b></td>
Line 491: Line 575:
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
   <td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
<td align="center"><font color="green">No</font></td>
</tr>
</tr>
<tr>
<tr>
   <td align="center"><strong>Sequence modified?</strong></td>
   <td align="center"><strong>Sequence modified?</strong></td>
Line 499: Line 586:
   <td align="center">Yes</td>
   <td align="center">Yes</td>
   <td align="center">Yes</td>
   <td align="center">Yes</td>
  <td align="center">&nbsp;</td>
  <td align="center">&nbsp;</td>
   <td align="center">&nbsp;</td>
   <td align="center">&nbsp;</td>
   <td align="center">&nbsp;</td>
   <td align="center">&nbsp;</td>
</tr>
</tr>
</table>
</table>

Latest revision as of 02:45, 20 August 2009

Biobricks

Module 1

Module 1 biobricks

Module 2

Module 2 biobricks

Module 3

Module 3 biobricks

Module Timer

Biobricks from the registry

Table 1. Biobricks we need from the registry


Promoters

Module Part BB # Kit Well # Plasmid Resistance Copy # Link
M1 Inducible (IPTG) BBa_R0011 KP1 2009 6G pSB1A2 A 100-300 Inducible (IPTG)
M2 Inducible (cAMP) BBa_K118011 KP2 2009 18D pSB1A2 A 100-300 Inducible (cAMP)
M3 Constitutive BBa_J23114 KP1 2009 20I BBa_J61002 A 15-20 (based on pBR322 ORI) Constitutive promoter
M3 Constitutive BBa_J23103 KP1 2009 18I BBa_J61002 A 15-20 (based on pBR322 ORI) Constitutive promoter
M3 Repressible (lambda cI) BBa_R0051 KP1 2009 6K pSB1A2 A 100-300 Promoter (lambda cI regulated)
M3-Testing Inducible(Arabinose) BBa_I0500 KP1 2009 14N pSB2K3 K Variable – IPTG results in high copy # (++100 per cell) pBAD Promoter




Ribosome Binding Sites

Module Part BB # Kit Well # Plasmid Resistance Copy # Link
M1,M2,M3 RBS BBa_B0034 KP1 2009 2M pSB1A2 A 100-300 RBS




Terminators

Module Part BB # Kit Well # Plasmid Resistance Copy # Link
1,2,3 Double terminator BBa_B0015 KP1 2009 23L pSB1AK3 AK 100-300 Double terminator




Composite Parts

Module Part BB # Kit Well # Plasmid Resistance Copy # Link
M1,M2,M3 (Testing) GFP generator BBa_E0240 KP1 2009 12M pSB1A2 A 100-300 GFP generator
M1,M2,M3 (Testing) GFP generator BBa_I13504 KP1 2009 22I pSB1A2 A 100-300 GFP generator
M1,M2,M3 (Testing) RFP generator BBa_I13507 KP1 2009 22O pSB1A2 A 100-300 RFP generator
M1,M2,M3 (Testing) Variable input (testing) BBa_F2620 KP2 2009 BB_Barry Box 1 6E pSB1A2 A 100-300 Variable input
M3 HARVARD - cI QPI with high promoter (heat sensitive) BBa K098995 KP3 2009 1E pSB1A2 A 100-300 cI QPI with high promoter



Biobricks from MrGene

Table 1. Biobricks we need to synthesise.




Biobricks

Gene NCBI Ref Nucleotide accession# Organism Xbal & SpeI sites Start? Stop? ORF References
PAH 5053 PAH # Homo Sapiens 1 and 0 Yes Yes 1359bp (+1) PAH
Cellulase 4810415 Cellulase # Clostridium thermocellum 0 and 0 Yes Yes 2445bp (+1) Add
RcsB 947441 RcsB # K12 MG1655 0 and 0 Yes Yes 651bp (+1) Add
B3023 945805 B3023 # K12 MG1655 0 and 0 Yes Yes 483bp (+1) Add
WaaL 948148 WaaL # K12 MG1655 0 and 0 Yes Yes 1260bp (+1) Add
OtsA 946405 OtsA # K12 MG1655 0 and 0 Yes Yes 1425bp (+1) Add
OtsB 946406 OtsB # K12 MG1655 0 and 0 Yes Yes 612bp (+1) Add
Dam 947893 Dam # K12 MG1655 0 and 0 Yes Yes 837bp (+1) Add
TaqI 6941926 TaqI # Thermodesulfovibrio yellowstonii DSM 11347 0 and 0 Yes Yes 777bp (+1) Add
DpnII 6029545 DpnII # Strepococcus pneumoniae Hungary19A-6 0 and 0 Yes Yes 867bp (+1) Add


Genes and biobrick compatibility

 

 PAH Cellulase rcsB B3023 waaL OtsA OtsB TaqI DpnII
EcoRI No No No No No No No No No
SpeI No No No No No No No No No
XbaI Yes No No No No No No No No
PstI Yes No Yes Yes No No No No No
NotI No No No Yes No No No No No
PvuII Yes (3) Yes No No No Yes No No No
XhoI Yes No No No No No No No No
AvrII No No No No Yes No No No No
NheI No No No No Yes No No No No
SapI No No No No No No No No No
Sequence modified?       Yes Yes        
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