Integrases/Excisionases pairs to test: Difference between revisions
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[http://www.ncbi.nlm.nih.gov/pubmed/8106318?ordinalpos=35&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [ | [http://www.ncbi.nlm.nih.gov/pubmed/8106318?ordinalpos=35&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [4]] | ||
[http://www.ncbi.nlm.nih.gov/pubmed/8752334?ordinalpos=32&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [ | [http://www.ncbi.nlm.nih.gov/pubmed/8752334?ordinalpos=32&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [5]] | ||
[http://www.ncbi.nlm.nih.gov/pubmed/10572133?ordinalpos=26&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [ | [http://www.ncbi.nlm.nih.gov/pubmed/10572133?ordinalpos=26&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [6]] | ||
[http://www.ncbi.nlm.nih.gov/pubmed/12057961?ordinalpos=18&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [ | [http://www.ncbi.nlm.nih.gov/pubmed/12057961?ordinalpos=18&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum [7]] | ||
Revision as of 19:09, 13 January 2009
The first experiment is design to test if integrases and excisionases pairs can flip a target sequence in both directions in a controlled manner. Then, we will test if these integrases are specific by putting them in presence of non-target sites. If this first set of experiment is successfull, we will thn perform a kinetic analysis of flipping, by varying time of induction and concentrations of recombinases.
Starter
Integrases/Excisionases pairs
We will start to test 3 pairs of the serine integrase family. Integrases from this family are interesting because they do not require specific cofactors and have been shown to work in a wide range of species. These 3 pairs are the best characterized members from the family which have an identified excisionase.
- Bxb1
From Mycobacterium phage Bxb1.
Uniprot entry:
Bxb1 integrase Bxb1 excisionase
References:
[1] Genome organization and characterization of mycobacteriophage Bxb1., mediavilla et al., Mol microbiol, 2000. PMID 1123671.
[2] Control of phage Bxb1 excision by a novel recombination directionality factor., Ghosh P. et al, PLoS Biol., 2006. PMID: 16719562.
[3] Phage Bxb1 integrase mediates highly efficient site-specific recombination in mammalian cells., Russel JP et al., Biotechniques, 2006. PMID:16629393
- TP901-1
From Lactococcus lactis phage TP901-1.
Uniprot entries:
TP901-1 integrase TP901-1 excisionase
References: [4]
[5]
[6]
[7]
- phiRV1 [int: o06604, RDF: o06606]
From
Uniprot entries: