Paul Magnano: Week 9 Individual Journal: Difference between revisions

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(analysis of excel data)
 
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*How many genes have p value < 0.05?
**none
*What about p < 0.01?
**none
*What about p < 0.001?
**none
*What about p < 0.0001?
**none
*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold
change greater than zero. How many meet these two criteria?
**none
*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria?
**none
*Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of > 0.25 and p < 0.05?
**none
*How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.)
**none
==NSR1==
*avgFC:0.8
*pvalue:0.9035
==Smallest P value==
*YLR194C 0.5000 @ t60
**Function: Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress
**Why?: Cold possibly causes stress on the cell wall.
*YKL177W 0.5000 @ t120
**Function: Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3
**Why?:Not enough info on the gene is given to hypothesize the reason why its expression changes.

Latest revision as of 22:42, 2 April 2013

Paul Magnano BIOL398-03/S13 User: Paul Magnano

Class Journals

Assignments/Individul Journals

change greater than zero. How many meet these two criteria?

    • none
  • Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria?
    • none
  • Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of > 0.25 and p < 0.05?
    • none
  • How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.)
    • none

NSR1

  • avgFC:0.8
  • pvalue:0.9035

Smallest P value

  • YLR194C 0.5000 @ t60
    • Function: Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress
    • Why?: Cold possibly causes stress on the cell wall.
  • YKL177W 0.5000 @ t120
    • Function: Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3
    • Why?:Not enough info on the gene is given to hypothesize the reason why its expression changes.
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