Xenopus Community: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
(→Other) |
||
| (7 intermediate revisions by 4 users not shown) | |||
| Line 1: | Line 1: | ||
[[Image:Hoatlin_frogs.jpg]] | [[Image:Hoatlin_frogs.jpg]] | ||
==XenCommunity== | ==XenCommunity== | ||
Under Construction. Edits and suggestions welcome. See [[Synthetic_Biology| Synthetic Biology Community Pages]] for ideas. | Under Construction. Edits and suggestions welcome. | ||
* See [[Synthetic_Biology| Synthetic Biology Community Pages]] for ideas. | |||
*[[Help:Contents | Edit help for this section or to make your own lab wiki]] | |||
*Editing is easy with [[Simple_wiki_editing_examples|wiki edit instructions]]. | |||
*It was a wonderful meeting in Japan, especially the meeting summary given by Jerry. | *It was a wonderful meeting in Japan, especially the meeting summary given by Jerry. | ||
==Discussion about having XenWiki on OWW or hosted at [[http://www.xenbase.org/ XenBase]]== | |||
*XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts. | |||
'''Advantages to hosting XenWiki on OWW''' | |||
*[[OpenWetWare:Why join?|general reasons to join OWW]] | |||
# Broader involvement with the non-Xenopus scientific community | |||
#Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology | |||
#OWW has a lab-tweaked mediawiki | |||
#very interactive scientists with many interests are managing the OWW site | |||
#learning curve for wikitricks (editing, etc) is very good because of all the help and organization on OWW. This will help new XenLabs get wikified. | |||
#don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki | |||
#backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera | |||
#it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later. It really is just copying and pasting code. In fact, we could probably export the whole lot for you. | |||
'''Advantages to hosting XenWiki through the [[http://www.xenbase.org/ XenBase]] server''' | |||
#direct links possible between Xenwiki and XenBase areas | |||
#*this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information. | |||
#control | |||
#private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights. Essentially, giving users the ability to place read/write controls on data. | |||
==What should be on this wiki vs what is already on JGI and XenBase== | ==What should be on this wiki vs what is already on JGI and XenBase== | ||
| Line 16: | Line 38: | ||
Collected from [http://blumberg-serv.bio.uci.edu/ Bruce Blumberg's] excellent Xine | ==Collected from [http://blumberg-serv.bio.uci.edu/ Bruce Blumberg's] excellent Xine== | ||
*[http://indigene.ibaic.u-psud.fr/article.php3?id_article=53 Xenopus Tutorial from Amy Sater] | *[http://indigene.ibaic.u-psud.fr/article.php3?id_article=53 Xenopus Tutorial from Amy Sater] | ||
| Line 26: | Line 48: | ||
*[http://www.xenbase.org/xine/xine.html] | *[http://www.xenbase.org/xine/xine.html] | ||
==Links to useful sources of information for Xenopus (in no particular order) general interest and utility== | |||
*[http://www.nih.gov/science/models/xenopus/ Trans NIH Xenopus initiative] | *[http://www.nih.gov/science/models/xenopus/ Trans NIH Xenopus initiative] | ||
*[http://tropicalis.berkeley.edu/home/ Harland lab X. tropicalis site] | *[http://tropicalis.berkeley.edu/home/ Harland lab X. tropicalis site] | ||
| Line 36: | Line 58: | ||
*[http://www.metazome.net/ metazome] | *[http://www.metazome.net/ metazome] | ||
==Genomic resources== | |||
*[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database] | *[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database] | ||
*[http://xgc.nci.nih.gov/ Xenopus gene collection] | *[http://xgc.nci.nih.gov/ Xenopus gene collection] | ||
| Line 45: | Line 66: | ||
*[http://www.xenbase.org/ Xenbase] | *[http://www.xenbase.org/ Xenbase] | ||
==Other== | |||
*[http://www.frogstore.com/home.php The Frog Store] Isn't the internet wonderful? | *[http://www.frogstore.com/home.php The Frog Store] Isn't the internet wonderful? | ||
<wikionly> | |||
<font size=4>'''Recent changes'''</font>{{Special:Recentchanges/Xenopus Community}} | |||
</wikionly> | |||
Latest revision as of 19:31, 17 June 2008
XenCommunity
Under Construction. Edits and suggestions welcome.
- See Synthetic Biology Community Pages for ideas.
- Edit help for this section or to make your own lab wiki
- Editing is easy with wiki edit instructions.
- It was a wonderful meeting in Japan, especially the meeting summary given by Jerry.
Discussion about having XenWiki on OWW or hosted at [XenBase]
- XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts.
Advantages to hosting XenWiki on OWW
- Broader involvement with the non-Xenopus scientific community
- Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology
- OWW has a lab-tweaked mediawiki
- very interactive scientists with many interests are managing the OWW site
- learning curve for wikitricks (editing, etc) is very good because of all the help and organization on OWW. This will help new XenLabs get wikified.
- don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki
- backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera
- it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later. It really is just copying and pasting code. In fact, we could probably export the whole lot for you.
Advantages to hosting XenWiki through the [XenBase] server
- direct links possible between Xenwiki and XenBase areas
- this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information.
- control
- private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights. Essentially, giving users the ability to place read/write controls on data.
What should be on this wiki vs what is already on JGI and XenBase
Discuss and decide what we need so we can ask NIH, get involved with NIH "report" recommendations
- notes from 11th Xen Meeting: Instructions for submitting a proposal NHGRC: see 'white paper' instructions on web site (need the link)
- program announcement due Jan 18 2007, document on web site but applications that do the best produce a resource for the community and also do good science, US labs and non-US labs are considered.
Next Meeting
- will be in Germany, details TBA
- contact committee for ideas for next meeting
Collected from Bruce Blumberg's excellent Xine
- Xine in html format, back issues
Links to useful sources of information for Xenopus (in no particular order) general interest and utility
- Trans NIH Xenopus initiative
- Harland lab X. tropicalis site
- Grainger lab X. tropicalis site
- Amy Sater's X. tropicalis genetic map site
- Information on the X. tropicalis listserver
- Peter Vize's Xenopus über database
- Zimmerman Lab X. tropicalis website, database of mutants
- metazome
Genomic resources
- XDB at NIBB - Naoto Ueno's X. laevis EST database
- Xenopus gene collection
- full length collection at the Gurdon Institute
- JGI X. tropicalis genome site with browser and other info
- AXELDB - Christof Niehrs' Xenopus database
- Xenbase
Other
- The Frog Store Isn't the internet wonderful?
<wikionly>
Recent changes
List of abbreviations:
- N
- This edit created a new page (also see list of new pages)
- m
- This is a minor edit
- b
- This edit was performed by a bot
- (±123)
- The page size changed by this number of bytes
8 May 2024
| 13:22 | Upload log Jernej Turnsek talk contribs uploaded File:Jernej-Turnšek-CV-May-2024.pdf | ||||
| 07:18 | UA Biophysics: Spectrofluorometer Instructions diffhist −635 Elizabeth Suesca talk contribs | ||||
| 06:22 | UA Biophysics: Autoclave Instructions ESP diffhist −7 Elizabeth Suesca talk contribs | ||||
| 06:21 | UA Biophysics: Autoclave Instructions diffhist −13 Elizabeth Suesca talk contribs | ||||
| 06:08 | Biophysics Lab:Lab Members diffhist +1,623 Elizabeth Suesca talk contribs | ||||
7 May 2024
|
|
N 23:18 | Altman:WUbites 10 changes history +1,113 [David Altman (10×)] | |||
|
|
23:18 (cur | prev) +2 David Altman talk contribs (→WUbites) | ||||
|
|
23:18 (cur | prev) +2 David Altman talk contribs (→WUbites) | ||||
|
|
23:18 (cur | prev) −3 David Altman talk contribs (→WUbites) | ||||
|
|
23:18 (cur | prev) +7 David Altman talk contribs (→WUbites) | ||||
|
|
23:17 (cur | prev) +18 David Altman talk contribs (→WUbites) | ||||
|
|
23:16 (cur | prev) +26 David Altman talk contribs (→WUbites) | ||||
|
|
23:15 (cur | prev) +22 David Altman talk contribs (→WUbites) | ||||
|
|
23:14 (cur | prev) +2 David Altman talk contribs (→WUbites) | ||||
|
|
23:13 (cur | prev) −16 David Altman talk contribs (→WUbites) | ||||
| N |
|
23:12 (cur | prev) +1,053 David Altman talk contribs (Created page with "{{Template:Altman}} <div style="padding: 10px; width: 700px; border: 5px solid #B22222;"> =<center>'''WUbites'''</center>= <br> This project is inspired by astrobites, whose goal is to present astrophysical papers in a brief format that is accessible to undergraduate students in the physical sciences. As part of Phys 390W, Science Communication in Physics (SCiP), Willamette Physics Majors sought to translate research articles from a variety of different topics in ph...") | |||
|
|
22:51 | Altman:Lab Members 2 changes history 0 [David Altman (2×)] | |||
|
|
22:51 (cur | prev) +19 David Altman talk contribs Tag: Manual revert | ||||
|
|
22:50 (cur | prev) −19 David Altman talk contribs | ||||
|
|
22:50 | Altman:Contact 2 changes history 0 [David Altman (2×)] | |||
|
|
22:50 (cur | prev) +19 David Altman talk contribs Tag: Manual revert | ||||
|
|
22:50 (cur | prev) −19 David Altman talk contribs | ||||
| 22:50 | Altman diffhist +19 David Altman talk contribs | ||||
</wikionly>
