Dahlquist:Notebook/Nutrigenomics/2010/02/24

Nutrigenomics

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2/24/10 GenMAPP Day 2 Created color sets for the four primary comparisons in my study WT12 vs. WT24 WT12 vs. TRAMPwater24 WT12 vs. TRAMPtreatTumorFree24 WT12 vs. TRAMPtreatTumors24 The following criterion was set in GenMAPP For increased-LogFC>0.25 and P-value <0.05 For decreased-LogFC<-0.25 and P-value <0.05 Colors were set-increased Red and decreased Green Once the color sets were set I proceeded on to the MAPPFinder program MAPPFinder From GenMAPP I accessed MAPPFinder and followed the protocol from the bioinformatics lab for each of the four color sets that I ran