IGEM:IMPERIAL/2008/Prototype/Drylab/ODE Model

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Home The Project B.subtilis Chassis Wet Lab Dry Lab Notebook


ODE Model

Refer to the genetic circuit

Genetic Circuit


Concentration of ytvA

\frac{d[ytvA]}{[dt]}=k_1-d_1[ytvA]

Where

k1 = Rate of transcription through p43/pveg promoter

d1 = Rate of degradation of ytvA

Concentration of epsE

\frac{d[epsE]}{[dt]}=k_2k_3[ytvA]-d_2[epsE]

Where

k2 = Rate of transcription through pctc/gsiB promoter, function of light intensity

k3 = Rate of transcription of epsE

d2 = Rate of degradation of epsE

Intracellular concentration of biomaterial

\frac{d[biomaterial]}{[dt]}=k_2k_4[ytvA]-d_3[biomaterial]

Where

k2 = Rate of transcription through pctc/gsiB promoter, function of light intensity

k4 = Rate of transcription of biomaterial

d3 = Rate of secretion of biomaterial


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