Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/Practical 1/Report
<html> <body> <!-- Start of StatCounter Code --> <script type="text/javascript"> var sc_project=3315875; var sc_invisible=0; var sc_partition=36; var sc_security="779debd0"; </script> <script type="text/javascript" src="http://www.statcounter.com/counter/counter_xhtml.js"></script><noscript><div class="statcounter"><a class="statcounter" href="http://www.statcounter.com/"><img class="statcounter" src="http://c37.statcounter.com/3315875/0/779debd0/0/" alt="web metrics" /></a></div></noscript> <!-- End of StatCounter Code --> </body> </html>
Practical 1: Report Structure
- Name:
- Department:
Part I: Introduction to Computer Modelling
- no report
Part II: Getting to know CellDesigner
- no report
Part III: Building Your First Model: A --> B --> C
- Comments on the evolution of 'A', 'B', 'C' + screenshot.
- Parameter scan done on k1 and k2 + screenshots.
- Give k1 and k2 + screenshot.
Part IV: Synthesis-Degradation Model
- Comments on the evolution of 'A' + screenshot
- Parameter scan on k1 and k2 + screenshots.
- Bonus: Analytical solution expression
- Half-life illustration Screenshot
- Bonus: Analytical expression of the half-life of compound 'A'.
Part V: Michaelis-Menten Model
- Write down all the kinetics laws you had to define.
- Screenshot from the reaction simulation + comments on the different phases.
- Michaelis-Menten formula derivation.
- Expressions of Km and Vmax.
- Screenshot of the reaction networks.
- Screenshot of the simulation outputs + comments.