Matt Gethers/Articles of General Interest

Articles of General Interest

Organized by Topic

Affibody Inactivation

BAC

Biologically Encoded Safety Mechanisms

Base Excision Repair

Charge Migration Along DNA

DNA Synthesis

Social Science and Synthetic Biology

Reactive Oxygen Species

Riboswitches

Organized Alphabetically

1. Andrianantoandro E, Basu S, Karig DK, and Weiss R. Synthetic biology: new engineering rules for an emerging discipline. Mol Syst Biol. 2006;2:2006.0028. DOI:10.1038/msb4100073 |
2. Anderson JC, Voigt CA, and Arkin AP. Environmental signal integration by a modular AND gate. Mol Syst Biol. 2007;3:133. DOI:10.1038/msb4100173 |
3. Balagaddé FK, Song H, Ozaki J, Collins CH, Barnet M, Arnold FH, Quake SR, and You L. A synthetic Escherichia coli predator-prey ecosystem. Mol Syst Biol. 2008;4:187. DOI:10.1038/msb.2008.24 |
4. Cherkasov A, Hilpert K, Jenssen H, Fjell CD, Waldbrook M, Mullaly SC, Volkmer R, and Hancock RE. Use of artificial intelligence in the design of small peptide antibiotics effective against a broad spectrum of highly antibiotic-resistant superbugs. ACS Chem Biol. 2009 Jan 16;4(1):65-74. DOI:10.1021/cb800240j |
5. Dasika MS and Maranas CD. OptCircuit: an optimization based method for computational design of genetic circuits. BMC Syst Biol. 2008 Mar 3;2:24. DOI:10.1186/1752-0509-2-24 |
6. Dhar PK, Thwin CS, Tun K, Tsumoto Y, Maurer-Stroh S, Eisenhaber F, and Surana U. Synthesizing non-natural parts from natural genomic template. J Biol Eng. 2009 Feb 3;3:2. DOI:10.1186/1754-1611-3-2 |
7. Drubin DA, Way JC, and Silver PA. Designing biological systems. Genes Dev. 2007 Feb 1;21(3):242-54. DOI:10.1101/gad.1507207 |
8. Fu P. A perspective of synthetic biology: assembling building blocks for novel functions. Biotechnol J. 2006 Jun;1(6):690-9. DOI:10.1002/biot.200600019 |
9. Greber D and Fussenegger M. Mammalian synthetic biology: engineering of sophisticated gene networks. J Biotechnol. 2007 Jul 15;130(4):329-45. DOI:10.1016/j.jbiotec.2007.05.014 |
10. Gore J and van Oudenaarden A. Synthetic biology: The yin and yang of nature. Nature. 2009 Jan 15;457(7227):271-2. DOI:10.1038/457271a |
11. Haseltine EL and Arnold FH. Implications of rewiring bacterial quorum sensing. Appl Environ Microbiol. 2008 Jan;74(2):437-45. DOI:10.1128/AEM.01688-07 |
12. Hasty J, McMillen D, and Collins JJ. Engineered gene circuits. Nature. 2002 Nov 14;420(6912):224-30. DOI:10.1038/nature01257 |
13. Hasty J, Isaacs F, Dolnik M, McMillen D, and Collins JJ. Designer gene networks: Towards fundamental cellular control. Chaos. 2001 Mar;11(1):207-220. DOI:10.1063/1.1345702 |
14. Kim J, White KS, and Winfree E. Construction of an in vitro bistable circuit from synthetic transcriptional switches. Mol Syst Biol. 2006;2:68. DOI:10.1038/msb4100099 |
15. Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8414-9. DOI:10.1073/pnas.0402940101 |
16. Lindström MS. Emerging functions of ribosomal proteins in gene-specific transcription and translation. Biochem Biophys Res Commun. 2009 Feb 6;379(2):167-70. DOI:10.1016/j.bbrc.2008.12.083 |
17. Marguet P, Balagadde F, Tan C, and You L. Biology by design: reduction and synthesis of cellular components and behaviour. J R Soc Interface. 2007 Aug 22;4(15):607-23. DOI:10.1098/rsif.2006.0206 |
18. Hamad-Schifferli K, Schwartz JJ, Santos AT, Zhang S, and Jacobson JM. Remote electronic control of DNA hybridization through inductive coupling to an attached metal nanocrystal antenna. Nature. 2002 Jan 10;415(6868):152-5. DOI:10.1038/415152a |
19. Serrano L. Synthetic biology: promises and challenges. Mol Syst Biol. 2007;3:158. DOI:10.1038/msb4100202 |
20. Tigges M, Marquez-Lago TT, Stelling J, and Fussenegger M. A tunable synthetic mammalian oscillator. Nature. 2009 Jan 15;457(7227):309-12. DOI:10.1038/nature07616 |
21. Walter JM, Greenfield D, Bustamante C, and Liphardt J. Light-powering Escherichia coli with proteorhodopsin. Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2408-12. DOI:10.1073/pnas.0611035104 |
22. Yonekura S, Nakamura N, Yonei S, and Zhang-Akiyama QM. Generation, biological consequences and repair mechanisms of cytosine deamination in DNA. J Radiat Res. 2009 Jan;50(1):19-26. DOI:10.1269/jrr.08080 |

K. Hamad-Schifferli, "Control of biomolecular activity by nanoparticle antennas," in BioMEMS and Biomedical Nanotechnology, vol II:Micro/Nano Technologies for Genomics and Proteomics, edited by Mihri Ozkan and Michael Heller (Kluwer, New York, 2006), invited contribution.

Synthetic Biology: Social and Ethical Challenges

Measurement of Radio Frequency Permittivity of Biological Tissues with an Open-Ended Coaxial Line: Part I