Moore Notes 4 24 13

Group Call

• Participants: Katie, Tom, Stephen, Guillaume, Dongying

• June 17 meeting in SF
  • Double check with JE and SF
  • Grant progress check
  • SFams discussion

• Guillaume
  • Will be pushing a MySQL dump shortly

• Database speed
  • Tom: installing TokuDB on shattuck
  • Katie: SAP visit
    • Compression
    • Databases in memory
  • Stephen: changing some of the MySQL settings, which also helps

• Tom: We need a JGI data file that maps IMG ID numbers (old to new)
  • Dongying: New people at JGI don't know a lot about IMG
  • Use sequence itself as the unique identifier?
  • Stephen: Try NCBI (higher level) ID
  • Dongying: Drop old sequence and just use new one
    • Tom: need to talk about how to implement this - could be very time consuming without much benefit

• Progress Report due June 1st
  • A couple sentences each due to Katie Friday, May 24