Schumer lab:Lab Meetings
Lab meeting/coffee hour schedule spring quarter 2023
4/4 Lab meeting - Tris gives practice quals talk
4/5 Coffee hour - no coffee hour
4/7 Old papers JC - group reads Rosen's 1960 dissertation for a comprehensive overview of Xiphophorus biology
4/11 Lab meeting - no lab meeting
4/12 Coffee hour - no coffee hour
4/18 Lab meeting - Victoria gives research update
4/19 Coffee hour - no coffee hour
4/21 Old papers JC - group reads Klaus Kallman's seminal 1975 paper on the Platyfish Xiphophorus maculatus
4/25 Lab meeting - lab plans for upcoming Mexico field trip
4/26 Coffee hour - Ken leads discussion of selection in hybrids
5/2 Lab meeting - lab plans for upcoming Mexico field trip
5/3 Coffee hour - Ben leads discussion of epistasis in yeast
5/5 Old papers JC - group reads 1994 paper on Xiphophorus neuropeptides
5/9 Lab meeting - lab plans for upcoming Mexico field trip
5/10 Coffee hour - Dan leads discussion of female preference in guppies
5/16 Lab meeting - no lab meeting
5/17 Coffee hour - no coffee hour
5/19 Old papers JC - no old papers JC
5/23 Lab meeting - no lab meeting
5/24 Coffee hour - no coffee hour
5/30 Lab meeting - Cheyenne gives practice defense
5/31 Coffee hour - Stepfanie leads paper on multivariate models of animal sex
6/2 Old papers JC - no old papers JC
6/6 Lab meeting - Ben, Dan, and Tris give Mexico field debrief
6/7 Coffee hour - Molly leads and introductory paper on Ancestral Recombination Graphs
6/13 Lab meeting - lab attends communication workshop
6/14 Coffee hour - lab at Cheyenne's defense!
6/2 Old papers JC - group reads Weis & Shartl's xmrk paper from 1998
6/20 Lab meeting - lab members give 5 minute research updates and discuss organization
6/21 Coffee hour - TBD
Lab meeting/coffee hour schedule winter quarter 2023
1/3 Lab meeting - lab members give 5 minute research updates
1/4 Coffee hour - no coffee hour
1/10 Lab meeting - Molly gives state of the lab update
1/11 Coffee hour - continued state of the lab discussion
1/13 Old papers JC - group reads Rauchenberger et al. 1990 which describes the northern swordtail group
1/17 Lab meeting - Katya Mack gives lab meeting on adaptation in mice
1/18 Coffee hour - Stepfanie gives practice job talk
1/24 Lab meeting - no lab meeting
1/25 Coffee hour - no coffee hour
1/27 Old papers JC - group reads Gordon (1953) and Borowsky (1990) on Xiphophorus habitat partitioning
1/31 Lab meeting - Anyi Mazo-Vargas gives lab meeting on butterfly wing enhancers
2/1 Coffee hour - Theresa and Dan lead fishroom meeting
2/7 Lab meeting - lab members give 5 minute research updates
2/8 Coffee hour - Ben leads discussion of Carlson et al. 2022 on weaponization of genetic research
2/14 Lab meeting - Zhiru Li gives lab meeting on bacterial recombination
2/15 Coffee hour - Molly leads AncestryHMM workshop
2/17 Old papers JC - group reads Kallman and Kazianis (2006) "recent" survey of the Xiphophorus genus
2/21 Lab meeting - February Mexico trip group gives update
2/22 Coffee hour - Cheyenne leads discussion of Martín-Zamora et al. (2013) on bilaterian development
2/24 Old papers JC - group reads Gordon (1927) one of the first Xiphophorus genetics papers
2/28 Lab meeting - Stepfanie gives practice chalk talk
3/1 Coffee hour - Victoria leads discussion of Mathur et al. 2022 on genetic load in quails
3/7 Lab meeting - Cheyenne gives research update
3/8 Coffee hour - Gabe leads discussion of Jacobs et al. 2019 on Denisovan introgression
3/10 Old papers JC - group reads Kallman (1970) on Xiphophorus sex chromosomes and pigment patterns
3/14 Lab meeting - lab day off!
3/15 Coffee hour - no coffee hour
3/21 Lab meeting - Bernard Kim gives lab meeting
3/22 Coffee hour - no coffee hour
3/24 Old papers JC - no old papers JC
Lab meeting/coffee hour schedule fall quarter 2022
9/20 Lab meeting - lab members give 5 member research updates
9/21 Coffee hour - Gabe and Stepfanie lead discussion of Toomey et al. (2022) on red coloration in birds and fishes
9/27 Lab meeting - lab discusses OAK organization
9/28 Coffee hour - JJ and Alex lead discussion of nanopore cas9 targeted sequencing
10/4 Lab meeting - lab gives feedback on Ken's hybridization perspective piece
10/5 Coffee hour - no coffee hour
10/11 Lab meeting - Callum McDiarmid gives lab meeting on Australian finch hybridization
10/12 Coffee hour - Carla Bautista gives coffee hour
10/18 Lab meeting - Dan and Theresa lead workshop on aquarium husbandry
10/19 Coffee hour - lab gives feedback on Tris's lizard genome assemblies paper
10/25 Lab meeting - Dan and Theresa lead workshop on distinguishing sex in Xiphophorus
10/26 Coffee hour - Ken gives practice job talk on PhD and postdoc work
11/1 Lab meeting - lab plans Schumer Lab birthday bash
11/2 Coffee hour - no coffee hour
11/8 Lab meeting - lab gives feedback on Victoria's practice quals talk
11/9 Coffee hour - Tris leads discussion of Mazo-Vargas et al. (2022) on butterfly wing pattern regulatory landscape
11/15 Lab meeting - no lab meeting
11/16 Coffee hour - lab attends integrative/organismal biology search talk
11/29 Lab meeting - Isabel Serrano gives lab meeting on mitochondrial work
11/30 Coffee hour - Dan gives practice job talk on PhD and postdoc work
12/6 Lab meeting - lab attends integrative/organismal biology search talk
12/7 Coffee hour - no coffee hour
Lab meeting/coffee hour schedule summer quarter 2022 (biweekly-ish schedule)
6/21 Lab meeting - Molly gives biannual lab climate survey report, followed by crafting
6/22 Coffee hour - Stepfanie gives practice plenary talk
6/28 Lab meeting - lab members give 5 minute research updates
6/22 Coffee hour - no coffee hour
7/5 Lab meeting - lab happy hour
7/6 Coffee hour - Molly hosts academic career chats/ ask me anything
7/12 Lab meeting - brief check in
7/13 Coffee hour - no coffee hour
7/19 Lab meeting - no lab meeting
7/20 Coffee hour - lab does sample ethanol change
8/2 Lab meeting - lab gives feedback on Shreya and Dan's paper on a 3-way hybrid zone
8/3 Coffee hour - lab members give 5 minute research updates
8/16 Lab meeting - Anna Feller gives lab meeting
8/17 Coffee hour - Ben leads coffee hour
9/6 Lab meeting - yearly lab-manual revision
9/7 Coffee hour - Ben Ruben gives coffee hour
9/13 Lab meeting - Roshni Patel gives lab meeting
9/14 Coffee hour - lab gives feedback on Gabe's phylogeny paper
9/20 Lab meeting - lab members give 5 member research updates
9/21 Coffee hour - Gabe and Stepfanie lead discussion of Toomey et al. (2022) on red coloration in birds and fishes
Lab meeting/coffee hour schedule spring quarter 2022
3/29 Lab meeting - lab members discuss field trip, lab retreat, lab jobs
3/30 Coffee hour - no coffee hour
4/5 Lab meeting - Gabriel Birzu gives lab meeting on hybridization in bacteria
4/6 Coffee hour - Cheyenne leads discussion of Weiss et al. (2022) on melanoma in zebrafish
4/12 Lab meeting - no lab meeting
4/13 Coffee hour - Dan leads discussion of Stolle et al. (2022) on introgression of a colony structure supergene in ants
4/19 Lab meeting - lab gives feedback on Molly's NSF DEB proposal
4/20 Coffee hour - Gabe leads discussion of Cagan et al. (2022) on the relationship between mutation rates and lifespan in mammals
4/26 Lab meeting - no lab meeting
4/27 Coffee hour - Ken leads discussion of Bock et al. (2021) on hybridization in an invasive lizard
5/3 Lab meeting - lab members give 5 minute research updates
5/4 Coffee hour - Quinn leads discussion of Morrill et al. (2022) on ancestry-inclusive dog genomics
5/10 Lab meeting - lab discusses field trip plans
5/11 Lab retreat!
5/17 Lab meeting - lab discusses nanopore sequencing
5/18 Coffee hour - processing and reflection check in
5/24 Lab meeting - no lab meeting
5/25 Coffee hour - Stepfanie leads discussion of Weasel (2022) on race and evolutionary genomics.
5/31 Lab meeting - Alyssa Fortier gives lab meeting on balancing selection and primate MHCs
6/1 Coffee hour - Gabe's first year talk
6/6 Lab meeting - lab gives feedback on introgression primer draft
6/7 Lab meeting - Yuki Haba gives lab meeting
6/8 Coffee hour - Shreya gives practice Evolution talk
6/14 Lab meeting - lab gives feedback on Molly's NSF CAREER proposal
6/15 Coffee hour - Molly leads JC discussion
Lab meeting/coffee hour schedule winter quarter 2022
1/04 Lab meeting - lab members all give 5 minute research updates
1/07 Coffee hour - Ken brainstorms simulations
1/11 Lab meeting - Molly gives state of the lab update
1/14 Coffee hour - brainstorming & code debugging
1/18 Lab meeting - no lab meeting
1/21 Coffee hour - Ken leads discussion of Monroe et al. (2022) on mutation bias in Arabidopsis
1/25 Lab meeting - Wenhan Chang gives lab meeting on Drosophila gene evolution and hybrid incompatibilities
1/28 Coffee hour - Ombuds workshop
2/01 Lab meeting - Frank Chan gives lab meeting
2/04 Coffee hour - Leon Hilgers gives a talk
2/08 Lab meeting - Lab discusses climate in Eco-Evo field
2/11 Coffee hour - Lab reads SSE code of ethics proposal and provides feedback
2/15 Lab meeting - Lab gives 5 minute research updates, discuss upcoming fishroom inspection
2/18 Coffee hour - Andy and Tris lead discussion of Kolora et al. (2021) on genomics of Rockfish aging
2/22 Lab meeting - Arielle Fogel gives talk on baboon hybridization
2/25 Coffee hour - Bioinformatics coffee hour
3/01 Lab meeting - Marianna Karageorgi gives talk
3/04 Coffee hour - Lab gives feedback on Ben's mito paper revisions
Lab meeting/coffee hour schedule fall quarter 2021
9/21 Coffee hour - brainstorming & code debugging
9/22 Lab meeting - Dan gives a practice talk
9/28 Coffee hour - lab gives feedback on Shreya's NSF GRFP
9/29 Lab meeting - Gaston Jofre visits and discusses his swordtail hybrid zone research
10/05 Coffee hour - lab gives feedback on Tris's NSF GRFP
10/06 Lab meeting - no meeting
10/12 Coffee hour - lab gives feedback on Gabe's NSF GRFP
10/14 Lab meeting - lab gives feedback on Stepfanie's flicker hybrid zone manuscript
10/19 Coffee hour - discussion of lab & fish room jobs & organization
10/21 Lab meeting - Molly presents on a new hybrid incompatibility
10/26 Coffee hour - Dan leads discussion of Muralidhar et al.'s preprint on hybrid ancestry bundling
10/28 Lab meeting - lab members all give 5 minute research updates
11/02 Coffee hour - Cheyenne, Quinn, and Ben share wisdom on OAK/Sherlock/slurm
11/04 Lab meeting - lab gives feedback on Ken's stickleback hybrid fitness manuscript
11/09 Coffee hour - November Mexico trip planning
11/11 Lab meeting - Ethan Jewett from 23andMe presents
11/16 Coffee hour - brainstorming & code debugging
11/18 Lab meeting - Ken gives a practice talk
11/23 Coffee hour - lab reads Bernard Kim's recent Current Biology paper on Drosophila introgression
11/25 Lab meeting - Thanksgiving break [no lab meeting]
11/30 Coffee hour - Ben, Cheyenne, Dan, and Theresa give update on Mexico trip [great success!!!]
12/02 Lab meeting - Molly out of town [no lab meeting]
12/07 Coffee hour - lab members swap desks
12/09 Lab meeting - TBD
12/14 Coffee hour - Stepfanie gives a practice job talk
12/16 Lab meeting - lab members all give 5 minute research updates
Lab meeting Schedule Winter Quarter 2020
1/17 - General beginning of the quarter meeting/ state of the lab
1/24 - Molly at UCSC no lab meeting
1/31 - Ben lab meeting talk
2/7 - Quinn leads discussion of Palkopoulou et al. 2018 PNAS
2/14 - Nick Altemose visits the lab and gives lab meeting
2/21 - Quinn CEHG practice talk
2/28 - Molly at Hopkins no lab meeting
3/6 - [Grad student admissions]
3/13 - Sivan Yair visits the lab and gives lab meeting
3/20 - Alisa Sedghifar visits the lab and give lab meeting
3/27 -
Past lab meetings
9/20
Dani - intro to quartzy
Dani - zebrabase, waste tags
9/27
Molly - quick intro to available resources: box, sample inventory, wiki, slack
Go over fish & wet lab chores
Discuss upcoming inspection
10/4
Molly - Oak & depositing data, electronic lab notebooks
Bernard - SLiM
10/11
Cheyenne - short research update
10/18
Cheyenne - Sherlock
Discuss spotted caudal paper
10/25
Molly - AncestryHMM
Lab meeting computational topics
AncestryHMM
mixnmatch
github
SLiM
Journal Club Schedule
8/16 Dan Parallel introgression and selection on introduced alleles in a native species
8/9 Cheyenne - Adaptive introgression enables evolutionary rescue from extreme environmental pollution
Journal Club paper ideas
Hybridization:
Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares
Neanderthal-Denisovan ancestors interbred with a distantly-related hominin
Adaptive introgression enables evolutionary rescue from extreme environmental pollution
On the distribution of tract lengths during adaptive introgression
Recombination:
Modulation of Prdm9-controlled meiotic chromosome asynapsis overrides hybrid sterility in mice
