Talk:20.109(S15):Phylogentic analysis (Day8)

From OpenWetWare

Jump to: navigation, search

Upload alignment files here

All birds MEGA file + extra data from S14 (birds 312, 290, 274): MEGA file
ID Files that correspond to MEGA file above: ID file with spaces
ID file without spaces

Name your alignment file according to this example: WF-TeamColor-alignment-FINAL

T/R Groups Final MEGA File (upload .mas file)
Orange TR302
Yellow
Green TR50
Blue TR58‎‎
Purple 6TR2


W/F Groups Final MEGA File (upload .mas file)
Red 040 revised 3.8.15 at 2:30pm
Orange 040/274
Yellow 274
Green 050/274
Blue 058/274 MEGA File
058/274 NWK File
058/274 Tree Image
Update:3/8 at 10:30am -- .mas bird 274 only
Update: 3/8 at 10:30am -- .mas bird 58 only + updated names of bacteria strains
Pink 290
Purple Media:WFPrp040_274.mas
Platinum media:Pt_WF_312_v2.mas

Upload sequence files here

T/R Team Color Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Sequence 9 (txt) Species overview (xlsx)
Orange 302 Bird302.C16 Bird302.C6 Bird302.C4 Bird302.14 Bird302.C13 Bird302.C15 Bird302.C11 Bird302.C7 Bird302.C8 TROrange302.xlsx
Yellow
Green 50 50.C1 50.C2; v2 - fixed sequence 50.C3 50.C4 Bird50.C5 Bird50.C8 Bird50.C9 Bird50.C10 Greenbird50
Blue 58 Bird58.C1‎ Bird58.C‎2 Bird58.C4 Bird58.C5‎ Bird58.C9 Bird58.C11 Bird58.C13 Bird58.C15‎ Bird58.C16 media:TRBlu58-SHEET.ex.xlsx
Purple 62 62.C12 62.C1 62.C9 62.C15 62.C18 62.C14 Bird62.C11 Bird62.C13 Bird62.C8 TRPrp62


W/F Team Color Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Sequence 9 (txt) Species overview (xlsx) Sequence 10 (txt) Sequence 11 (txt) Sequence 12 (txt)
Red 040 bad sequence 040_C2 040_C3 040_C4 040_C5 040_C11 040_C12 bad sequence 040_species sheet
Orange 040/274 040_C18 040_C15 040_C17 040_C19 274_C16 274_C18 274_C20 274_C19 040/274 species sheet
Yellow 274 274_C1 274_C6 274_C7 274_C10 274_C11 274_C12 274_C13 274_C15 274 species sheet
Green 050/274 050_C6 050_C7 050_C13 050_C14 050_C15 050_C16 050_17 050_20 274_FP_9 Species Overview 274_FP_10 274_FP_11 274_FP_12
Blue 058/274 058_C19 058_C17 058_C20 274_C1 274_C2 274_C4 274_C3 274_C6 058/274
Pink 290 290_F1 290_F2 290_F3 290_F4 290_F5 290_C6 290
Purple 040/274 Media:WFPurple040C6.txt Media:WFPurple040C7.txt Media:WFPurple040C9.txt Media:WFPurple040C10.txt Media:WFPurple274FP7.txt Media:WFPurple274FP11.txt Media:WFPurple274FP12.txt Media:WFPurple_BLAST.xlsx
Platinum 312 312_C1 312_C5 312_C7 312_C2 312_C10 312_C9 312_C11 312_C12 312_C6 312_C14 312_All
Personal tools