UA Biophysics:SysBio Meeting:2019-II Meetings:Journal Watch 10 September 2019

Cell Division:

| Equatorial Assembly of the Cell-Division Actomyosin Ring in the Absence of Cytokinetic Spatial Cues

Cooperation in bacterias:

| Growth dynamics and the evolution of cooperation in microbial populations

Chemotaxis

Environment-noise interaction:

| Computational Investigation of Environment-Noise Interaction in Single-Cell Organisms: The Merit of Expression Stochasticity Depends on the Quality of Environmental Fluctuations

| Escherichia coli can survive stress by noisy growth modulation

Environment switching – Environmental fluctuations:

| A Paradoxical Evolutionary Mechanism in Stochastically Switching Environments

| Survival analysis for tumor cells in stochastic switching environment

| The Impact of Environmental Fluctuations on Evolutionary Fitness Functions

Evolution of Cooperation:

| Conflict within cooperation

| Evolution of conditional cooperation under multilevel selection

Gene expression in bacteria:

| A portable epigenetic switch for bistable gene expression in bacteria

| Gene silencing with CRISPRi in bacteria and optimization of dCas9 expression levels

| Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence

| Stochasticity of gene expression as a motor of epigenetics in bacteria: from individual to collective behaviors

Growth model:

| PDE model of cell cycle dynamics and clustering in yeast

Membrane simulation:

| Antibiotic interactions using liposomes as model lipid membranes

| Force Field Development for Lipid Membrane Simulations

| Cardiolipin-Dependent Properties of Model Mitochondrial Membranes from Molecular Simulations

Microfluidics:

| Mechanical characterization of single cells based on microfluidic techniques

| Microfluidics towards single cell resolution protein analysis

| Single-cell assays using integrated continuous-flow microfluidics

| High-Reynolds Microfluidic Sorting of Large Yeast Populations

| Cellular geometry scaling ensures robust division site positioning

| Generating kinetic environments to study dynamic cellular processes in single cells

| Flavin-based metabolic cycles are integral features of growth and division in single yeast cells

Optimization Protein Expression:

| Optimization of expression of orange carotenoid protein in Escherichia coli

Bacterial persistence:

| Prolonged bacterial lag time results in small colony variants that represent a sub-population of persisters

| RETRACTED ARTICLE: A switch in the poly(dC)/RmlB complex regulates bacterial persister formation

| Definitions and guidelines for research on antibiotic persistence

| Enhanced antibiotic resistance development from fluoroquinolone persisters after a single exposure to antibiotic

| HokB Monomerization and Membrane Repolarization Control Persister Awakening

Phenotypic switching:

| A Paradoxical Evolutionary Mechanism in Stochastically Switching Environments

| Stochastic modeling of phenotypic switching and chemoresistance in cancer cell populations

| Regulated Stochasticity in a Bacterial Signaling Network Permits Tolerance to a Rapid Environmental Change

Stochastic evolutionary games:

| Analytical Results for Individual and Group Selection of Any Intensity

| Computation and Simulation of Evolutionary Game Dynamics in Finite Populations

| Computer simulations of cellular group selection reveal mechanism for sustaining cooperation

| Fixation probabilities in evolutionary dynamics under weak selection

| Public goods games in populations with fluctuating size

| Stochastic evolutionary voluntary public goods game with punishment in a Quasi-birth-and-death process

Growth and division control:

| Nucleoid Size Scaling and Intracellular Organization of Translation across Bacteria

| Environment-dependent pleiotropic effects of mutations on the maximum growth rate r and carrying capacity K of population growth

| Divergent Aging of Isogenic Yeast Cells Revealed through Single-Cell Phenotypic Dynamics

| The Min Oscillator Defines Sites of Asymmetric Cell Division in Cyanobacteria during Stress Recovery

Other topics:

| Molecular Strategies of Meiotic Cheating by Selfish Centromeres

| Multi-Color Single-Molecule Imaging Uncovers Extensive Heterogeneity in mRNA Decoding

| Single-Molecule Nanoscopy Elucidates RNA Polymerase II Transcription at Single Genes in Live Cells

| Intrinsic Dynamics of a Human Gene Reveal the Basis of Expression Heterogeneity

| Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks

| Cytoplasmic Amplification of Transcriptional Noise Generates Substantial Cell-to-Cell Variability

| Self-Amplifying Pulsatile Protein Dynamics without Positive Feedback