User:Jarle Pahr/Bowtie
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Notes on the Bowtie aligner:
http://bowtie-bio.sourceforge.net/index.shtml
https://github.com/BenLangmead/bowtie
Bowtie 2: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
http://www.molecularevolution.org/resources/activities/velvet_and_bowtie_activity
Bibliography
Fast gapped-read alignment with Bowtie 2:
http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1923.html