IGEM:Harvard/2006/DNA nanostructures: Difference between revisions

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Image:Websmallbarrsingleply.jpg|[[IGEM:Harvard/2006/Container Design 4|Design 4]]<br>hexagonal core, separate 1-ply lids
Image:Websmallbarrsingleply.jpg|[[IGEM:Harvard/2006/Container Design 4|Design 4]]<br>hexagonal core, separate 1-ply lids
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==Agenda: Week 3==
Mon:
* figure out aptamer-oligo for end of nanotube (Aptamer Sequence: GGTTGGTGTGGTTGG)
* redesign, w/ all latches
* modify Python program for latches
Tue:
Wed:
Th:
Fri:
* do aptamer-nanotube experiment (fold, gel)


==Coding==
==Coding==

Revision as of 10:55, 3 July 2006

Project Overview

  • Our goal is to to design and implement molecular containers, which can be dynamically opened and closed by an external stimulus.
  • The containers will be implemented as DNA nanostructures, which afford a significant degree of positional control and chemical versatility.
  • As an initial proof-of-concept, we plan to use our DNA containers to demonstrate controllable activation ("delivery") of anti-thrombin aptamers.
  • We expect that molecular containers could have several interesting scientific and clinical applications, such as
    • Drug and gene delivery
    • Bio-marker scavenging (early detection of biomarkers)
    • Directed evolution (compartmentalized selections)
    • Using multiplexing for combinatorial chemical synthesis
    • Capture and stabilization of multiprotein complexes
    • Protein folding (chaperones)
    • Cell sorting

Container Designs

Coding

Existing code

Presentations

Most recent (Week 3)

Week 2: Original proposal

Working Team Members