IGEM:IMPERIAL/2006/project/Oscillator/project browser/Prey Construct/Design: Difference between revisions
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==Design Choices== | ==Design Choices== | ||
*Design must fulfil the [http://openwetware.org/wiki/IGEM:IMPERIAL/2006/project/Oscillator/project_browser/Prey_Construct specifications]. | *Design must fulfil the [http://openwetware.org/wiki/IGEM:IMPERIAL/2006/project/Oscillator/project_browser/Prey_Construct specifications for the prey construct]. | ||
*Part design will be based on Quorum-sensing/quenching and the availability of BioBricks. | *Part design will be based on Quorum-sensing/quenching and the availability of BioBricks. | ||
::*Research into the registry directed us to use AHL as our prey molecule. | ::*Research into the registry directed us to use AHL as our prey molecule. |
Revision as of 19:15, 29 October 2006
Super Parts | Molecular Prey-Predator Oscillator | ||
---|---|---|---|
Actual Part | |||
Sub Parts | Test Sensing Prey Construct | <bbpart>C0261</bbpart> | <bbpart>I13401</bbpart> |
Registry
- The prey part: J37015 @ MIT Parts Registry
Design Choices
- Design must fulfil the specifications for the prey construct.
- Part design will be based on Quorum-sensing/quenching and the availability of BioBricks.
- Research into the registry directed us to use AHL as our prey molecule.
- Design allows for an exponential increase of AHL (to fulfil the Lotka-Volterra model) via a positive feedback loop.
- The prey part can be decoupled into a prey sensing part and a prey producing part.
- Initiation of positive feedback loop depends on leaky expression of the tetR promoter which is a constitutive promoter.
- This leaky expression produces LuxR which can form a dimer with AHL already withing the cell.
- LuxR, AHL and promoter control the expression of LuxI which produces AHL.
- Design allows for assesment of status of positive feedback loop via:
- GFP Production - Linked to LuxI expression
- AHL Production - Can be indirectly assessed according to J37015 protocol.
INPUTS | biological component | comments |
---|---|---|
AHL | LuxR & pLuxR | To initiate the positive feedback loop, LuxR is produced via leaky expression of the tetR promoter. |
OUTPUTS | biological component | comments |
AHL | LuxI | LuxR, AHL and pLuxR form a complex, activating production of LuxI expression which causes enzymatic generation of AHL |