User:Tk/Notebook/MF/2008/07/22: Difference between revisions

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* 30987-31083 unknown lipoprotein (type IIB, 2'dG, Guanine, Guanosine sensitive)
* 30987-31083 unknown lipoprotein (type IIB, 2'dG, Guanine, Guanosine sensitive)
* 31958-32054  glycerol 3 p transport (type IIIA, guanine sensitive)
* 31958-32054  glycerol 3 p transport (type IIIA, guanine sensitive)
* 397027-397123 GMP synthase (type IIIB, guanine sensitive)
* 397027-397123 GMP synthase (type IIIB, guanine sensitive)* 484139-484044  xanthine uracil permease (type IV, adenine sensitive)
* 484139-484044  xanthine uracil permease (type IV, adenine sensitive)
* 625606-626509 ribonucleotide reductase (type 1A, 2'dG sensitive)
* 625606-626509 ribonucleotide reductase (type 1A, 2'dG sensitive)
* 668955-668859  phosphate transport (type IIA, 2'dG and G sensitive)
* 668955-668859  phosphate transport (type IIA, 2'dG and G sensitive)
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Data from Kim08 paper
Data from Kim08 paper
==Thi Box Sequence==
Hit to THI domain at 49321
Alignment of domains THI vs Userseq 163-74/65.32
          .....[[[[[((((,,<<<<<<___________________>>>>>>,,,,<<<<<<<<_
        1 aauaaccaccaGGGGUGCcucuugcaauUuUcAaAaguggaagagGCUGAGaggggggug 60
            +A :::::AG:GGU: C :                    : G :UGAGA+
      163 GUAAGAAGGCAGAGGUAGCGA---------------------AAGCUUGAGAA------- 132
          ______________>>>>>>>>,,)))),,,,,,,,<<<<---<<<<<____>>>>>---
        61 ugaUgcgaguuuucggcuucuagACCCuUuGAugaACCUGAGUCuGGuUAAUaCCaGCGu 120
                                A AC:CUU+GA  ACCUGA UCU:GUUAAUAC:AGCG
      131 ---------------------AUACUCUUAGA---ACCUGA-UCUAGUUAAUACUAGCG- 98
          >>>>,,,,]]]]]............
      121 UAGGGAaAgguggcuauuaauuuua 145
          UAGG+A  ::::: +AU+++UUUU
        97 UAGGAA-GUCCUAAAAUAUUUUUUC 74
>Thi-Box  49483-49384  promoter for Mfl035 unknown transporter (complement)
GUAAGAAGGCAGAGGUAGCGAAAGCUUGAGAAAUACUCUUAGAA
CCUGAUCUAGUUAAUACUAGCGUAGGAAGUCCUAAAAUAUUUUUUC




Revision as of 12:57, 22 July 2008

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Purine riboswitches

  • 29947-30044 unknown lipoprotein (type 1B, 2'dG sensitive)
  • 30987-31083 unknown lipoprotein (type IIB, 2'dG, Guanine, Guanosine sensitive)
  • 31958-32054 glycerol 3 p transport (type IIIA, guanine sensitive)
  • 397027-397123 GMP synthase (type IIIB, guanine sensitive)* 484139-484044 xanthine uracil permease (type IV, adenine sensitive)
  • 625606-626509 ribonucleotide reductase (type 1A, 2'dG sensitive)
  • 668955-668859 phosphate transport (type IIA, 2'dG and G sensitive)
  • 778350-778150 xylose transporter (followed by ribose transport operon and purine nucleoside phosphorylation) (type IIIC, guanine sensitive)

Data from Kim08 paper

Thi Box Sequence

Hit to THI domain at 49321

Alignment of domains THI vs Userseq 163-74/65.32 


          .....[[[[[((((,,<<<<<<___________________>>>>>>,,,,<<<<<<<<_
        1 aauaaccaccaGGGGUGCcucuugcaauUuUcAaAaguggaagagGCUGAGaggggggug 60
            +A :::::AG:GGU: C :                     : G :UGAGA+
      163 GUAAGAAGGCAGAGGUAGCGA---------------------AAGCUUGAGAA------- 132



          ______________>>>>>>>>,,)))),,,,,,,,<<<<---<<<<<____>>>>>---
       61 ugaUgcgaguuuucggcuucuagACCCuUuGAugaACCUGAGUCuGGuUAAUaCCaGCGu 120
                               A AC:CUU+GA   ACCUGA UCU:GUUAAUAC:AGCG
      131 ---------------------AUACUCUUAGA---ACCUGA-UCUAGUUAAUACUAGCG- 98



          >>>>,,,,]]]]]............
      121 UAGGGAaAgguggcuauuaauuuua 145
          UAGG+A  ::::: +AU+++UUUU
       97 UAGGAA-GUCCUAAAAUAUUUUUUC 74

>Thi-Box 49483-49384 promoter for Mfl035 unknown transporter (complement) 

GUAAGAAGGCAGAGGUAGCGAAAGCUUGAGAAAUACUCUUAGAA
CCUGAUCUAGUUAAUACUAGCGUAGGAAGUCCUAAAAUAUUUUUUC




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