User:Tk/Notebook/MF/2008/07/22
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Mesoplasma florum simplification | <html><img src="/images/9/94/Report.png" border="0" /></html> Main Page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Purine riboswitches
Data from Kim08 paper Thi Box SequenceHit to THI domain at 49321 Alignment of domains THI vs Userseq 163-74/65.32
.....[[[[[((((,,<<<<<<___________________>>>>>>,,,,<<<<<<<<_ 1 aauaaccaccaGGGGUGCcucuugcaauUuUcAaAaguggaagagGCUGAGaggggggug 60 +A :::::AG:GGU: C : : G :UGAGA+ 163 GUAAGAAGGCAGAGGUAGCGA---------------------AAGCUUGAGAA------- 132
______________>>>>>>>>,,)))),,,,,,,,<<<<---<<<<<____>>>>>--- 61 ugaUgcgaguuuucggcuucuagACCCuUuGAugaACCUGAGUCuGGuUAAUaCCaGCGu 120 A AC:CUU+GA ACCUGA UCU:GUUAAUAC:AGCG 131 ---------------------AUACUCUUAGA---ACCUGA-UCUAGUUAAUACUAGCG- 98
>>>>,,,,]]]]]............ 121 UAGGGAaAgguggcuauuaauuuua 145 UAGG+A ::::: +AU+++UUUU 97 UAGGAA-GUCCUAAAAUAUUUUUUC 74 >Thi-Box 49483-49384 promoter for Mfl035 unknown transporter (complement) GUAAGAAGGCAGAGGUAGCGAAAGCUUGAGAAAUACUCUUAGAA CCUGAUCUAGUUAAUACUAGCGUAGGAAGUCCUAAAAUAUUUUUUC
FMN Riboswitch
SRP RNA fragment
RNAse P RNA fragment
tmRNA
Ribosomal protein L10 leader
Ribosomal protein L21 leader
T-Box
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