Berglund:SDS-PAGE
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SDS-PAGE Gels
The old, longer protocol can be found here.
Separating Gel
10% | 13% | 15% | 18% | ||||||
---|---|---|---|---|---|---|---|---|---|
2 gels | 3 gels | 4 gels | 3 gels | 4 gels | 2 gels | 4 gels | 2 gels | 4 gels | |
40% (29:1) Acrylamide | 2mL | 3mL | 4mL | 4mL | 5.3mL | 3mL | 6mL | 3.6mL | 7.2mL |
1M Tris pH 8.9 | 3.12mL | 4.68mL | 6.24mL | 4.68mL | 6.24mL | 3.12mL | 6.24mL | 3.12mL | 6.24mL |
ddH2O | 2.8mL | 4.2mL | 5.6mL | 3.2mL | 4.3mL | 1.8mL | 3.6mL | 1.2mL | 2.4mL |
10% SDS | 83.3μL | 125μL | 166.6μL | 120μL | 166.6μL | 83.3μL | 166.6μL | 83.3μL | 166.6μL |
Total volume | 8mL | 12mL | 16mL | 12mL | 16mL | 8mL | 16mL | 8mL | 16mL |
- Mix separating gel.
- Add 50μL fresh ammonium persulfate and 16μL TEMED. (More TEMED = faster polymerization).
- Pour 4mL per gel (up to the bottom of the green bar) using P1000 pipette.
- Layer 2-methyl-1-propanol (isobutanol) or isopropanol on top.
- Leave at room temperature for >30 minutes to polymerize.
- Wash out isobutanol with distilled H2O, dry with strip of Whatman paper.
Stacking Gel
2 gels | 3 gels | 4 gels | |
---|---|---|---|
40% (29:1) Acrylamide | 0.5mL | 0.735mL | 0.98mL |
1M Tris pH 6.8 | 0.6mL | 0.875mL | 1.16mL |
ddH2O | 3.5mL | 5.24mL | 6.9mL |
10% SDS | 50μL | 75μL | 100μL |
Total volume | 4.6mL | 7mL | 9.3mL |
- Mix stacking gel.
- Add 50μL fresh ammonium persulfate and 12μL TEMED.
- Pour ~2mL per gel (to nearly the top of the plates) using P1000 pipette.
- Insert combs, clean spills.
- Leave at room temperature for >30 minutes to polymerize.
To use immediately
- Put into gel box with small plate facing core of the box.
- Lock in the plates so there are no leaks.
- Pour 1x SDS running buffer into the core of the box so that it spills over the glass plates and into the base of the box.
- Carefully remove combs by pulling straight up.
- Use a pipette tip to straighten any crooked wells.
To store for later use
- Remove plates from rack.
- Remove comb
- Wrap tightly with saran wrap with lightly moistened paper towel in between plates.
- Label with name, date, and gel percentage and store at 4°C.
PLEASE don't store plates with combs, we don't have enough combs for long term storage!
Buffers
- Mix sample with dye, 1:4 for 5x, 1:1 for 2x. Boil at 100°C for 2 min.
- Run gel at 8milliamps until dye has reached the separating gel then at 25milliamps until dye has reached the bottom of the gel.
10X SDS Running buffer*
- 1134g Glycine
- 240g Tris base
- Add to 6L of DDH2O while stirring.
- After dissolved, bring final volume to 8L.
- pH to 8.8, store at room temperature.
1XSDS Running Buffer*
- Make fresh from 10X (1L of 10x into 9L of water)
- Add 20% SDS to give final concentration of 0.1% (50ml into 10L)
*These are no longer the buffer protocols we use. Will be updated someday.