Lurbinah Week 5
Assignments
- BIOL368/S20:Week 1
- BIOL368/S20:Week 2
- BIOL368/S20:Week 3
- BIOL368/S20:Week 4
- BIOL368/S20:Week 5
- BIOL368/S20:Week 6
- BIOL368/S20:Week 8
- BIOL368/S20:Week 9
- BIOL368/S20:Week 10
- BIOL368/S20:Week 13
- BIOL368/S20:Week 14
Weekly Assigments
- lurbinah Week 2
- lurbinah Week 3
- lurbinah Week 4
- lurbinah Week 5
- lurbinah Week 6
- lurbinah Week 7
- lurbinah Week 8
- lurbinah Week 9
- lurbinah Week 10
- lurbinah Week 11
- lurbinah Week 12
- lurbinah Week 13
- lurbinah Week 14
Class Journal Assigments
- BIOL368/S20:Class Journal Week 1
- BIOL368/S20:Class Journal Week 2
- BIOL368/S20:Class Journal Week 3
- BIOL368/S20:Class Journal Week 4
- BIOL368/S20:Class Journal Week 5
- BIOL368/S20:Class Journal Week 6
- BIOL368/S20:Class Journal Week 7
- BIOL368/S20:Class Journal Week 8
- BIOL368/S20:Class Journal Week 9
- BIOL368/S20:Class Journal Week 10
- BIOL368/S20:Class Journal Week 11
- BIOL368/S20:Class Journal Week 12
- BIOL368/S20:Class Journal Week 13
- BIOL368/S20:Class Journal Week 14
Purpose
Analyze the data of the Markham et al (1998) paper using online tools and getting comfortable with some data analyzers programs.
Activity 1
Part 1: PubMed
How did you search for the PubMed entry?
- open the NCBI page
- Selected pubmed option
- paste the code for the paper
What other ways might you have searched?
- Go to NCBI website
- type the name of the paper without any filter
- Use the link of the paper to pubmed
- Nucleotides of the sequences of the genes analyzed in that paper
- link to other scientific websites
- Protein information
- Other related articles
Part 2: Gen Bank
What was the accession number of the sequence you chose?
*AF089136
Which subject of the study was that HIV sequence from?
- Subject 5, visit 5, clone 5
Which section of the record contains information about who the HIV was collected from?
- Its is under definition, and the name of the strain is created to provided the information of the subject, visit and clone number
Part 3: Introduction to Phylogeny.fr
Alignment in Clustal Format
CLUSTAL FORMAT: MUSCLE (3.8) multiple sequence alignment
AF089141.1 GATGTAGTAATTAGATCCGCCAATTTCACGAACAATGCTAAAACCATATTAGTACAGCTG
AF089135.1 GATGTAGTAATTAGATCCGCCAATTTCACGAACAATGCTAAAACCATATTAGTACAGCTG
AF089136.1 GATGTAGTAATTAGATCCGCCAATTTCACGAACAATGCTAAAACCATATTAGTACAGCTG
AF089153.2 GAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAATTATAATAGTACAGCTG
AF089541.1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
** ************** ********* * ********** *** **********
AF089141.1 AATGAAACTGTAGTAATGAATTGTACAAGACCCGGCAACAATACAAGAAAAAGGGTAACT
AF089135.1 AATGAAACTGTAGTAATGAATTGTACAAGACCCGGCAACAATACAAGAAAAAGGGTAACT
AF089136.1 AATGAAACTGTAGTAATGAATTGTACAAGACCCGGCAACAATACAAGAAAAAGGGTAACT
AF089153.2 AATGAATCTGTAGAAATTAATTGTACAAGACCCAACAACCATACAGTAAGAAAGATACCT
AF089541.1 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
***** ****** *** *************** **** ***** ** ** ** **
AF089141.1 CTAGGACCAGGCAGAGTATACTATACAACAGGACAAATAATAGGGGATATAAGAAAAGCA
AF089135.1 CTAGGACCAGGCAGAGTATACTATACCACAGGACAAATAATAGGAGATATAAGAAAAGCA
AF089136.1 CTAGGACCAGGCAGAGTATACTATACCACAGGACAAATAATAGGAGATATAAGAAAAGCA
AF089153.2 ATAGGACCAGGGAGAGCATTTTATACAACAGG---CAGAATAGGAGATATAAGGCAAGCA
AF089541.1 ATAGGACCAGGCAGGGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
********** ** * ** ***** ***** * ****** ******** *****
AF089141.1 CATTGTAACCTTAGTAGAGCAGGTTGAAATAACACTTTAGAAAGAATAGCTATAAAATTA
AF089135.1 CATTGTAACCTTAGTAGAGCAGGTTGGAATAACACTTTAGAAAGGATAGCTATAAAATTA
AF089136.1 CATTGTAACCTTAGTAGAGCAGGTTGGACTAACACTTTAGAAAGAATAGCTATAAAATTA
AF089153.2 CATTGTAACATTAGTAGAACAAAATGGAATAACACTTTAAAACTGATAGTTAACAAATTA
AF089541.1 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
********* ******** ** ** * * * ****** ** **** ** ******
AF089141.1 AGAGAACAATTTCAGAATAAAACAATAGCCTTTAATCAATCCTCA
AF089135.1 AGAGAACAATTTCAGAATAAAACAATATTCTTTAATCAATCCTCA
AF089136.1 AGAGAACAATTTCAGAATAAAACAATATTCTTTAATCAATCCTCA
AF089153.2 AGAGAACAATTTAGGAATAAAACAATAATCTTTAATCAATCCTCA
AF089541.1 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
* ********** ************* ***** ** *******
Phylogenetic tree
Activity 2
Part 1 Looking at clustering across subjects
| Subject | Clone # |
| 7 | 1 |
| 2 | |
| 3 | |
| 9 | 1 |
| 2 | |
| 3 | |
| 12 | 1 |
| 2 | |
| 3 | |
| 15 | 1 |
| 2 | |
| 3 |
Phylogenetic tree. Subject 7, 9, 12, 15 visits: 1,2,3
- Do the clones from each subject cluster together?
- Each of the different clones from each subject cluster together. There are not clones of different subjects cluster together.
- Do some subjects' clones show more diversity than others?
- All of them are evenly spread vertically. Although clones from subject 9, 12 and close 2 of subject 5 showed more divergence than the rest.
- Do some of the subjects cluster together?
- No, subjects are evenly spread.
- Write a brief description of your tree and how you interpret the clustering pattern with respect to the similarities and potential evolutionary relationships between subjects' HIV sequences.
- The clones of each subject are more related to each other than to other subject's clones. Additionally, diversity seems to be even in all them, however subjects 9, and 12, and clone 2 of subject 5 seemed to have more divergence than the rest of the clones.
Part 2
CLUSTAL FORMAT: MUSCLE (3.8) multiple sequence alignment of subject 9
S9V7-2 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGATAATGCTAAAACCATAATAGTACAGCTG
S9V7-8 GAGGTAGTGGTTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-7 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-9 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-10 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V7-6 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V6-2 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V6-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V6-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGTTG
S9V6-8 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGTTG
S9V6-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAACTG
S9V6-7 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAACTG
S9V4-6 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-2 GAGGTAGTGGTTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-11 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-2 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-7 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-6 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-8 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V6-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-7 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V6-6 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-10 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-8 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V4-9 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V1-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTGCAGCTG
S9V1-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTGCAGCTG
S9V5-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V5-9 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-7 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V1-2 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-6 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V2-2 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V2-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V1-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V2-1 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-2 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V2-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V1-3 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTGCAGCTG
S9V2-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-4 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-5 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V3-8 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V8-1 GAGGTAGTGCTTAGATCCGCCAATTTCACAAACAATGCTAAAACCATAATAGTACAGCTG
S9V8-4 GAGGTAGTGCTTAGATCCGCCAATTTCACAAACAATGCTAAAACCATAATAGTACAGCTG
S9V8-5 GAGGTAGTGCTTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V8-2 GAGGTAGTGCTTAGATCCGCCAATTTCACAAACAATGCTAAAACCATAATAGTACAGCTG
S9V8-3 GAGGTAGTGGTTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V8-6 GAGGTAGTGCTTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V8-7 GAGGTAGTGATTAGATCCGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTG
S9V8-8 GAGGTAGTGGTTAGATCCGCCAATTTCACAAACAATGCTAAAACCATAATAGTACGGCTG
********* ******************** * ******************** * **
S9V7-2 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-4 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAGCAACAATACAAGAAAAAGTATAAAT
S9V7-8 AAAGACCATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-7 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-9 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAACT
S9V7-10 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V7-6 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-2 AAAGAACATGTAAAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-5 AAAGAACATGTAAAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-8 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-4 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAACT
S9V6-7 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAACT
S9V4-6 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-2 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-11 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-2 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-7 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-6 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-8 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-4 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAACACAAGAAAAAGTATAAAT
S9V4-7 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAGAAGTATAAAT
S9V5-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V6-6 AAAGAACATGTAAAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-4 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-10 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-8 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V4-9 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V1-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V1-4 AAAGAACATGTAGAAATAAATTGCACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V5-9 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-7 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V1-2 AAAGAACATGTAGAAATAAATTGTGCAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-6 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V2-2 AAAGAACATGTAGAAATAAATTGTACAAGACCCAGCAACAATACAAGAAAAAGTATAAAT
S9V2-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V1-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V2-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-2 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V2-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V1-3 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V2-4 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-4 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V3-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAGTACAAGAAAAAGTATAAAT
S9V3-8 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V8-1 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V8-4 AAAGACCATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V8-5 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V8-2 AAAGAACATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V8-3 AAAGACCATGTAGAAATAAATTGTACAAGACCCAACAACAATACAGGAAAAAGTATACAT
S9V8-6 AAAGACCATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACAT
S9V8-7 AAAGACCATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
S9V8-8 AAAGACCATGTAGAAATAAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAAT
***** ****** ********** ********* ***** *** *** ******* *
S9V7-2 ATAGGACCAGGAAGAGCATTTTATGCAACAGGAGAAATAATAGGAGACATAAGACAAGCA
S9V7-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V7-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATACGACAAGCA
S9V7-3 ATAGGACCAGGAAGAGCATTTTATGCAACAGGAACAATAATAGGGGATATACGACAAGCA
S9V7-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V7-8 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V7-7 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V7-9 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V7-10 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V7-6 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V6-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V6-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V6-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V6-8 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V6-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V6-7 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAGGCA
S9V4-6 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V5-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V4-11 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V5-7 ATAGGACCAGGGAGAGCATTTTATGCAACAGGGGAAATAATAGGAGATATAAGACAAGCA
S9V5-6 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGCAATAATAGGAGATATAAGGCAAGCA
S9V5-8 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V6-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V5-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V5-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-7 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGCAATAATAGGAGATATAAGACAAGCA
S9V5-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAGGCA
S9V6-6 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V3-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V3-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCC
S9V4-10 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-8 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V4-9 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V1-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V1-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V5-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V5-9 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S9V3-7 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGCAATAATAGGAGATATAAGACAAGCA
S9V1-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V3-6 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V2-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V2-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V1-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V2-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V3-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V2-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V1-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V2-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V3-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V3-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V3-8 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAACAATAATAGGAGATATAAGACAAGCA
S9V8-1 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-4 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-5 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-2 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-3 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-6 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-7 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
S9V8-8 ATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAATAGGAAATATAAGACAAGCA
*********** ******************** ********* * *** * ** **
S9V7-2 CATTGTAACATTAGTAGAACAAAATGGAATGAGACCTTAAGACAGATAGTAGAAAAATTA
S9V7-4 CATTGTAACATCAGTGGAGCAAAATGGAATGAGACCTTAAAACAGATAGCTAAAAAATTA
S9V7-1 CATTGTAACATCAGTGGAACAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V7-3 CATTGTAACATCAGTGGAACAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V7-5 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGGAAAATTA
S9V7-8 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGCTGGAAAATTA
S9V7-7 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGGAAAATTA
S9V7-9 CATTGTAACATTAGTGGAACAAAATGGAATGACACCTTAAGACAGATAGCTGGAAAATTA
S9V7-10 CATTGTAACATTAGTGGAACAAAATGGAATGACACCTTAAGACAGATAGCTGGAAAATTA
S9V7-6 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAGACAGATAGCTGGAAAATTA
S9V6-2 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAGACAGATAGCTGGAAAATTA
S9V6-5 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGCTGGAAAATTA
S9V6-3 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGCTGAAAAATTA
S9V6-8 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAGACAGATAGCTGAAAAATTA
S9V6-4 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V6-7 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V4-6 CATTGTAATATTAGTGGAGCAAAATGGAATAACACATTAAAACAGACAGCTGAAAAATTA
S9V5-2 CATTGTAACGTTAGTGGAGCAAAATGGCATAACACCTTAAAACAGATAGTTGAAAAATTA
S9V4-11 CATTGTAATATTAGTGGAGCAAAATGGCATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V4-2 CATTGTAATATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAACTA
S9V5-7 CATTGTAACATTAGTGGAACAAAATGGAATAACACCTTAAAACAGATAGTTGAAAAATTA
S9V5-6 CATTGTAACATTAGTGGAGCAAAATGGAATAACACCTTAAAACAGATAGTTGAAAAATTA
S9V5-8 CATTGTAACATTAGTGGAACAAAATGGAATAACACCTTAAAACAGATAGTTGAAAAATTA
S9V6-1 CATTGTAACATTAGTGGAGCAAAATGGAATAACACCTTAAAACAGATAGTTGAAAAATTA
S9V5-4 CACTGTAACATTAGTGGAGTAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V5-5 CATTGTAACATTAGTGGAGTAAAATGGAATGACACCTTAAAACAGATAGCTGAAAAATTA
S9V4-5 CACTGTAATATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTCGAAAAATTA
S9V4-7 CATTGTAATATTAGTGGAGCAAAATGGAATGGCACCTTAAAACAGATAGTTGAAAAATTA
S9V5-3 CATTGTAACATTAGTGGAGCAAAATGGAATAACACCTTAAAACAGATAGTTGAAAAATTA
S9V6-6 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-3 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-1 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V4-1 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTCGAAAAATTA
S9V4-4 CATTGTAATATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTCGAAAAATTA
S9V4-3 CATTGTAATATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGCTGAAAAATTA
S9V4-10 CATTGTAATATTAGTGGAGCAAAATGGAATGGCACCTTAAAACAGATAGTTGAAAAATTA
S9V4-8 CATTGTAATATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V4-9 CATTGTAATATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V1-5 CATTGTAACATTAGTGGAGCAAAATGGAAGGACACCTTAAAACAGATAGTTGAAAAATTA
S9V1-4 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V5-1 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V5-9 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-7 CATTGTAACATTAGTGGAGCAAAATGGAAAGACACCTTAAAACAGATAGTTGAAAAATTA
S9V1-2 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAGATTA
S9V3-6 CATTGTAACATTAGTGGAGCAAAATGGAAAGACACCCTAAAACAGATAGTTGAAAAATTA
S9V2-2 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V2-3 CATTGTAACATTAGTGGAGCAAAATGGAAAGACACCTTAAAACAGATAGTTGAAAAATTA
S9V1-1 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V2-1 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-2 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V2-5 CATTGTAACATTAGTGGAGCAAAATGGAAAGACACCTTAAAACAGATAGTTGAAAAATTA
S9V1-3 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V2-4 CATTGTAACATTAGTGGAGCAAAATGGAATGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-4 CATTGTAACATTAGTGGGGCAAAATGGAAAGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-5 CATTGTAACATTAGTGGAGCAAAATGGAAAGACACCTTAAAACAGATAGTTGAAAAATTA
S9V3-8 CATTGTAACATTAGTGGAGCAAAATGGAAAGACACCTTAAAACAGATAGTTGAAAAACTA
S9V8-1 CATTGTAATATTAGCAG---AAAATGGAATAACACCTTAGAACAGATAGTTAAAAAATTA
S9V8-4 CATTGTAATATTAGCAG---AAAATGGAATAACACCTTAGAACAGATAGTTAAAAAATTA
S9V8-5 CATTGTAATATTAGCAG---AAAATGGAATAACACCTTAGAACAGATAGTTAAAAAATTA
S9V8-2 CATTGTAATATTAGCAG---AAAATGGAATAACACCTTAGAACAGATAGTTAAAAAATTA
S9V8-3 CATTGTAATATTAGCAG---AAAATGGAATAACACCTTAGAACAGATAGTTAAAAAATTA
S9V8-6 CATTGTAATATTAGCAG---AAAATGGAATAACACCTTAGAACAGATAGTTAAAAAATTA
S9V8-7 CATTGTAATATTAGTAGAGGAAAATGGAATAACACCTTAAAACAGATAGTTAAAAAATTA
S9V8-8 CATTGTAATATTAGTAGAACAAAATGGAATAACACCTTAAAACAGATAGTTAAAAAATTA
** ***** * ** * ******* * ** ** ***** ** ** * **
S9V7-2 AGAGAACAATTTAGAAATAAAATAATAATCTTTAATCACTCCTCA
S9V7-4 AGAGAACAATTTGGGAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-1 AGAGAACAATTTGGGAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-3 AGAGAACAATTTGGGAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-5 AAAGAACAATTTGGGAATAAAATAATAATCTTTAATCACTCCTCA
S9V7-8 AGAGAACAATTTGGGAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-7 AGAGAACAATTTGGAAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-9 AGAGAACAATTTGGGAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-10 AAAGAACAATTTGGGAATAAAACAATAATCTTTAATCACTCCTCA
S9V7-6 AGAAAACAATTTAGCAATAAAATAATAGTCTTTAATCACTCCTCA
S9V6-2 AGAGAACAATTTCAGGATAAAACAATAGTCTTTAATCACTCCTCA
S9V6-5 AGAGAACAATTTCAGAATAAAATAATAGTCTTTAGTCACTCCTCA
S9V6-3 AGAGAACAGTTTCATGATAGAACAATAATCTTTAATCACTCCTCA
S9V6-8 AGAGAACAATTTCATAATAAAACAATAATCTTTAATCACTCCTCA
S9V6-4 AGAAAACAATTTCAGGATAAAACAATAATCTTTAATCACTCCTCA
S9V6-7 AGAAAACAATTTCAGGATAAAACAATAATCTTTAATCACTCCTCA
S9V4-6 AGAGAACAATTTCAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-2 AAAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V4-11 AAAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V4-2 AAAGAACAATTTAAGAATAGAACAATAGTCTTTAATCACTCCTCA
S9V5-7 AAAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-6 AAAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-8 AGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V6-1 AGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-4 AGAGAACAATTTCAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-5 AGAGAACAATTTCAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V4-5 AGAGAACAATTTCAGAATAGAACAATAGTCTTTAATCACTCCTCA
S9V4-7 AGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-3 AAAGAACAATTTCAGAATAAAATAATAGTCTTTAATCACTCCTCA
S9V6-6 AGAGAACAATTTCAGAATAAAACAATAATCTTTAATCACTCCTCA
S9V3-3 AGAGAACAATTTCAGAATAGAACAGTAGTCTTTAATCACTCCTCA
S9V3-1 AAAGAACAATTTCAGAATAAAACAGTAGTCTTTAATCACTCCTCA
S9V4-1 AGAGAACAATTTCAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V4-4 AGAGAACAATTTCAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V4-3 AGAGAACAATTTCAGAATAGAACAATAGTCTTTAATCACTCCTCA
S9V4-10 AGAGAACAATTTAAGAATAGAACAATAGTCTTTAATCACTCCTCA
S9V4-8 AGAGAACAATTTAAGAATAGAATAATAGTCTTTAATCACTCCTCA
S9V4-9 AGAGAACAATTTCAGAATAGAACAATAGTCTTTAATCACTCCTCA
S9V1-5 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V1-4 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-1 AAAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V5-9 AAAGAACAATTTCAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V3-7 AGAGAACAATTTGAGAATAGAACAATAGTCTTTAATCACTCCTCA
S9V1-2 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V3-6 AGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V2-2 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V2-3 AGAGAACAATTTGAGAATAAAATAATAGTCTTTAATCACTCCTCA
S9V1-1 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V2-1 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V3-2 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V2-5 AGAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V1-3 AAAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V2-4 AAAGAACAATTTGAGAATAAAACAATAGTCTTTAATCACTCCTCA
S9V3-4 AGAGAACAATTTCATAATAAAACAGTAGTCTTTAATCACTCCTCA
S9V3-5 AGAGAACAATTTAAGAATAAAACAGTAGTCTTTAATCACTCCTCA
S9V3-8 AGAGAACAATTTAAGAATAGAACAGTAGTCTTTAATCACTCCTCA
S9V8-1 AGAGAACAATTTCCGGGTAGAACAATAGTCTTTAATCACTCCCCA
S9V8-4 AGAGAACAATTTCCGGGTAGAACAATAGTCTTTAATCACTCCTCA
S9V8-5 AGAGAACAATTTCCGGGTAGAACAATAGTCTTTAATCACTCCTCA
S9V8-2 AGAGAACAATTTCCGGGTAGAACAATAGTCTTTAATCACTCCTCA
S9V8-3 AGAGAACAATTTCCGGGTAGAACAATAGTCTTTAATCACTCCTCA
S9V8-6 AGAGAACAATTTCCGGGTAGAACAATAGTCTTTAATCACTCCTCA
S9V8-7 AGAGAACAATTT---AATAAAACAATAGTCTTTAATCACTCCTCA
S9V8-8 AGAGAACAATTT---AATAAAACAATAGTCTTTAATCACTCCTCA
* * **** *** ** ** * ** ****** ******* **
CLUSTAL FORMAT: MUSCLE (3.8) multiple sequence alignment Subject 11
S11V1-4 GAGGTAATAATTAGATCTAAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-8 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-2 GAGGTAATAATTAGATCTGAGAATTTCTCAAATAATGCTAAAAACATAATAGTACAGCTG
S11V3-5 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V1-2 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-2 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-6 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-5 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V2-1 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-9 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V1-7 GAGGTAATAATTAGATCTAAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V1-1 GAGGTAATAATTAGATCTAAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-4 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-1 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-3 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-10 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-8 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V1-5 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V1-6 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V2-4 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V2-3 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V2-5 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V2-6 GAGGTAATAATTAGGTCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-1 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-3 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-4 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-6 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-9 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V4-7 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V1-3 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V2-2 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
S11V3-7 GAGGTAATAATTAGATCTGAGAATTTCTCAAACAATGCTAAAAACATAATAGTACAGCTG
************** *** ************* ***************************
S11V1-4 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V4-8 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-2 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACCAAGGATAATA
S11V3-5 AATAAATCTGTAGTAATTAATTGTACAAGACCCGATAACACTATAAAACAAAGGATAATA
S11V1-2 AATGAATCTGTAGTAATTACTTGTACAAGACCCGACAACACTATCAAACAAAGGATAATA
S11V4-2 AATGAATCTGTAGTAATTAATTGTGCAAGACCCGACTACACTATAAAACAAAGGATAATA
S11V4-6 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACTACACTATAAAACAAAGGATAATA
S11V4-5 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V2-1 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V4-9 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACTACACTATAAAACAAAGGATAATA
S11V1-7 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V1-1 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V4-4 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V4-1 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V4-3 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-10 AATGAATCTGTAGTAATTAATTGTACGAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-8 AATGAATCTGTAGTAATTAATTGTACCAGACCCGACAACACTATAAAACAAAGGATAATA
S11V1-5 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V1-6 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V2-4 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V2-3 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V2-5 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V2-6 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-1 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-3 AATGGATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-4 AATGAATCTGTAGTGATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-6 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-9 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V4-7 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V1-3 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V2-2 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
S11V3-7 AATGAATCTGTAGTAATTAATTGTACAAGACCCGACAACACTATAAAACAAAGGATAATA
*** ********* **** **** * ******** ******* **** **********
S11V1-4 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-8 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-2 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAGATATAAGACAAGCA
S11V3-5 CATATAGGACCAGGGAGACCATTCTATACAACAGAAATAAAAGGAAATATAAGACAAGCA
S11V1-2 CATATAGGACCAGGGAGACCATTCTATACGACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-2 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-6 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-5 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V2-1 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-9 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V1-7 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V1-1 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-4 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-1 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAGATATAAGACAAGCA
S11V4-3 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAGATATAAGACAAGCA
S11V3-10 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-8 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V1-5 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V1-6 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V2-4 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V2-3 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V2-5 CATATAGGACCAGGGAGACCATTCTATACAACAAGAATAAAAGGAAATATAAGACAAGCA
S11V2-6 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-1 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-3 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-4 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-6 CATGTAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-9 CATATAGGACCAGGGAGACCATTCTATACAGCAGGAATAAAAGGAAATATAAGACAAGCA
S11V4-7 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V1-3 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V2-2 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
S11V3-7 CATATAGGACCAGGGAGACCATTCTATACAACAGGAATAAAAGGAAATATAAGACAAGCA
*** ************************* ** ********** **************
S11V1-4 CATTGTAACGTTAGTGAGGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-8 CATTGTAACGTTAGTGGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAAAAACTTA
S11V3-2 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-5 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V1-2 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-2 CATTGTAACGTTAGTGGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-6 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTATAAAATTA
S11V4-5 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V2-1 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTAAGAAAATTA
S11V4-9 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAAAAAATTA
S11V1-7 CATTGTAACGTTAGTAGAGGACAATGGGATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V1-1 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-4 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-1 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-3 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAAAAAATTA
S11V3-10 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-8 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V1-5 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTGGAAAATTA
S11V1-6 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAGATTA
S11V2-4 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAGATTA
S11V2-3 CATTGTAACGTTAGTAGAGGACAATGGAATAGAACTTTAGAACAGGTAGTTAGAAAATTA
S11V2-5 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V2-6 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-1 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-3 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-4 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-6 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-9 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V4-7 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V1-3 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V2-2 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
S11V3-7 CATTGTAACGTTAGTAGAGGACAATGGAATAAAACTTTAGAACAGGTAGTTAGAAAATTA
*************** ********* *** ****************** ** ***
S11V1-4 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-8 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-2 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-5 AGAGAACAATATGGACCGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V1-2 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-2 AGAGAACAATATGGACTAAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-6 AGAGAACAATATGGGCCTAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-5 AGAGAACAATATGGGCCTAATAAAACAATAGTCTTTAAGCAACCCATA
S11V2-1 AGAGAACAATATGGACTGAACAAAACAATAGTCTTTAAGCAACCCATA
S11V4-9 AGAGAACAATATGGACTAAATAAAACAATAGTCTTTAAGCAACCCATA
S11V1-7 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V1-1 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-4 AGAGAACAATATGGACTAAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-1 AGAGAACAATATGGACTAAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-3 AGAGAACAATATGGACTAAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-10 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-8 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V1-5 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V1-6 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V2-4 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V2-3 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V2-5 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V2-6 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-1 AGAGAACAATATGGACCGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-3 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-4 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-6 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-9 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V4-7 AGAGAACAATATGGACTGAATAAAACAATAGCCTTTAAGCAACCCATA
S11V1-3 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V2-2 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
S11V3-7 AGAGAACAATATGGACTGAATAAAACAATAGTCTTTAAGCAACCCATA
************** * ** ********** ****************
CLUSTAL FORMAT: MUSCLE (3.8) multiple sequence alignment Subject 12
S12V1-4 GAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTG
S12V8-5 GAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTA
S12V4-2 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V4-4 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-8 GGGGTAGTAATTAGATCCAAGGATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V3-1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-5 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V1-3 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V1-2 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V2-1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V2-4 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V3-2 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V3-3 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-10 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-3 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-4 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-8 GAGGTAGTAATTAGATCCAAGAATTTCGCGGATAATGCTAAAATCATAATAGTACAGCTA
S12V4-1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V4-6 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V2-2 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-7 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V3-5 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
12V5-3 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V1-1 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V2-3 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V3-4 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V4-3 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-2 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-2 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V4-5 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-4 GAGGTAGTAATTAGATCCAAGGATTTCACGGATAAAGCTAAAATCATAATAGTACAGCTA
S12V5-6 GAGGTAGTAATTAGATCCAAGGATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-7 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V5-9 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
S12V8-6 GAGGTAGTAATTAGATCCAAGAATTTCACGGATAATGCTAAAATCATAATAGTACAGCTA
* *************** ***** **** ** ******* ***************
S12V1-4 AACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-5 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACAT
S12V4-2 AATGAGACTGTGGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V4-4 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-8 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V3-1 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-5 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-1 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACGATACAAGAAAGAGTATACCT
S12V1-3 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V1-2 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACCATACAAGAAAAAGTATACCT
S12V2-1 AATGGGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V2-4 AATGAGACTGTAGAAGTTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V3-2 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V3-3 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-1 AATGAGACTGTGGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-10 AATGAGACTGTAGAAATTAATTGTACAAGACCTAACAACAATACAAGAAAAAGTATACCT
S12V8-3 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-4 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-8 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V4-1 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V4-6 AATGAGACCGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V2-2 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-7 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V3-5 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-3 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V1-1 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V2-3 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V3-4 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V4-3 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-2 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-2 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V4-5 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-4 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-6 GATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-7 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V5-9 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
S12V8-6 AATGAGACTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCT
* * ** *** **************** ****** ********** ******* *
S12V1-4 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-5 ATAGGACCAGGCAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V4-2 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V4-4 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-8 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V3-1 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-5 ATAGGACCAGGCAGAGCATCTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-1 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V1-3 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V1-2 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V2-1 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V2-4 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V3-2 ATAGGACCAGGCAGAGCATCTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V3-3 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-1 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-10 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-3 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-4 ATAGGACCAGGCAGAGCGTTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-8 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V4-1 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V4-6 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V2-2 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-7 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V3-5 ATAGGACCAGGCAGGGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-3 ATAGGACCAGGCAGGGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V1-1 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V2-3 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V3-4 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V4-3 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-2 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-2 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V4-5 ATAGGACCAGGCAGAGCATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-4 ATAGGACCAGGCAGGGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-6 ATAGGACCAGGCAGGGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-7 ATAGGACCAGGCAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V5-9 ATAGGACCAGGCAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
S12V8-6 ATAGGACCAGGCAGAGCATTTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCA
************** ** * **** ***********************************
S12V1-4 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-5 CATTGTACCCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V4-2 CATTGTAACCTTAGTGGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V4-4 CATTGTAACCTTAGTGGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-8 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V3-1 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-5 CATTGTAACCTTAGTAGAGCAAAATGGAGTGAAACTTTAAAACAGATAGTTATAAAATTG
S12V8-1 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V1-3 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V1-2 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V2-1 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V2-4 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V3-2 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V3-3 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTCATAAAATTA
S12V5-1 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-10 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-3 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-4 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-8 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V4-1 CATTGTACCCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V4-6 CATTGTACCCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V2-2 CATTGTAACCTTAGTAGAGCAAAATGGAATGAGACTTTAAAACAGATAGTTATAAAATTA
S12V5-7 CATTGTAACCTTAGTAGAGCAAAATGGAATGAGACTTTAAAACAGATAGTTATAAAATTA
S12V3-5 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-3 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V1-1 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V2-3 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V3-4 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V4-3 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-2 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-2 CATTGTAACCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V4-5 CATTGTACCCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-4 CATTGTACCCTTAGTAGAGCAAAATGGGATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-6 CATTGTACCCTTAGTAGAGCAAAATGGGATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-7 CACTGTACCCTTAGTAGAGCAAAATGGAATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V5-9 CATTGTACCCTTAGTAGAGCAAAATGGGATGAAACTTTAAAACAGATAGTTATAAAATTA
S12V8-6 CATTGTACCCTTAGTAGAGCAAAATGGGATGAAACTTTAAAACAGATAGTTATAAAATTA
** **** ******* *********** *** ***************** ********
S12V1-4 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-5 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V4-2 AAAGAACAATTCAGGAATAAAACGATAGTCTTTAGTCCATCCTCA
S12V4-4 AAAGAACAATTCAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-8 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V3-1 AAAGAACAATTTAGAAATAAAACAATAGTCCTTAGTCCATCCTCA
S12V5-5 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-1 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V1-3 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATTCTCA
S12V1-2 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V2-1 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V2-4 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V3-2 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V3-3 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-1 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-10 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-3 AAAGAACAATTTAGGAATAAAACGATAGTCTTTAGTCCATCCTCA
S12V8-4 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-8 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V4-1 AAAGAACAATTTAGGAATAAGACAATAGTCTTTAGTCCATCCTCA
S12V4-6 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V2-2 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-7 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V3-5 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-3 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V1-1 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V2-3 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V3-4 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V4-3 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-2 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-2 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V4-5 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-4 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-6 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-7 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V5-9 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
S12V8-6 AAAGAACAATTTAGGAATAAAACAATAGTCTTTAGTCCATCCTCA
*********** ** ***** ** ****** ********* ****
| Subject | Number of Clones | S | Theta |
|---|---|---|---|
| 9 | 64 | 66 | 13.82 |
| 11 | 32 | 34 | 8.2560 |
| 12 | 37 | 41 | 9.61 |
Activity 3
What is your question?
- Are the interim visits important to record and analyze the decline of CD4 t cells in order to accurately map the progression of HIV evolution?
Make a prediction (hypothesis) about the answer to your question before you begin your analysis.
- A steeper negative regression of CD4 T cells is directly proportional to HIV evolution. increasing mutation and diversity. We expect rapid progressor to have a greater absolute value slope.
Which subjects, visits, and clones will you use to answer your question?
- All subjects, first and last visit.
Conclusion
Acknowledgement
- I contacted my homework partner, Sahil Patel and Karina Vescio over to clarify some questions I had
- I copied and modified wiki syntax on formatting a photo from the Media Wiki Help Page
- I copied and modified the procedures shown on the Week 5 Page and copy the table format
- Except for what is noted above, this individual journal entry was completed by me and not copied from another source. Lurbinah (talk)
References
OpenWetWare. (2020). BIOL368/S20:Week 1. Retrieved January 22, 2020, from https://openwetware.org/wiki/BIOL368/S20:Week_1
MediaWiki. (2020). Help:Images. Retrieved January 22, 2020, from https://www.mediawiki.org/wiki/Help:Images
