Bioinformatics of S-layer Proteins: Difference between revisions
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R[http://ca.expasy.org/tools/protparam.html ProtParam tool] Physico-chemical parameters: | R[http://ca.expasy.org/tools/protparam.html ProtParam tool] Physico-chemical parameters: | ||
# '''Number of amino acids:''' 920 | # '''Number of amino acids:''' 920 | ||
# [[Amino Acid Composition]] | # [[SbsB Amino Acid Composition]] | ||
# '''Total number of negatively charged residues (Asp + Glu):''' 109 | # '''Total number of negatively charged residues (Asp + Glu):''' 109 | ||
# '''Total number of positively charged residues (Arg + Lys):''' 97 | # '''Total number of positively charged residues (Arg + Lys):''' 97 | ||
# [[Atomic composition:]] | # [[SbsB Atomic composition:]] | ||
# [[Extinction coefficients]] | # [[SbsB Extinction coefficients]] | ||
# [[Other Parameters]] | # [[SbsB Other Parameters]] | ||
R[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected | R[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected | ||
R[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS] [[Statistical Analysis of Protein Sequence]] | R[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS] [[SbsB Statistical Analysis of Protein Sequence]] | ||
[http://www.ch.embnet.org/software/COILS_form.html COILS] [[Coiled Coils ]] | [http://www.ch.embnet.org/software/COILS_form.html COILS] [[SbsB Coiled Coils ]] | ||
[http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[Coiled Coils from Paircoils ]] | [http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[SbsB Coiled Coils from Paircoils ]] | ||
[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]] | [http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[SbsB Coiled Coils that may dimeric or trimeric]] | ||
==Sap== | ==Sap== | ||
Revision as of 10:03, 4 August 2005
SbpA
SbpA Protein Sequence - AAF22978
Compute pI/MW tool Theoretical pI/Mw: 4.80 / 132046.80
ProtParam tool Physico-chemical parameters:
- Number of amino acids: 1268
- Amino Acid Composition
- Total number of negatively charged residues (Asp + Glu): 122
- Total number of positively charged residues (Arg + Lys): 91
- Atomic composition:
- Extinction coefficients
- Other Parameters
REP No repeat detected
SAPS Statistical Analysis of Protein Sequence
Paircoil Scoring Form Coiled Coils from Paircoils
MultiCoil Scoring Form Coiled Coils that may dimeric or trimeric
SbsB
SbsB Protein Sequence - CAA66724.1
Compute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32
RProtParam tool Physico-chemical parameters:
- Number of amino acids: 920
- SbsB Amino Acid Composition
- Total number of negatively charged residues (Asp + Glu): 109
- Total number of positively charged residues (Arg + Lys): 97
- SbsB Atomic composition:
- SbsB Extinction coefficients
- SbsB Other Parameters
RREP No repeat detected
RSAPS SbsB Statistical Analysis of Protein Sequence
Paircoil Scoring Form SbsB Coiled Coils from Paircoils
MultiCoil Scoring Form SbsB Coiled Coils that may dimeric or trimeric
Sap
Sap Protein Sequence - P49051
RCompute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32
RProtParam tool Physico-chemical parameters:
- Number of amino acids: 920
- Amino Acid Composition
- Total number of negatively charged residues (Asp + Glu): 109
- Total number of positively charged residues (Arg + Lys): 97
- Atomic composition:
- Extinction coefficients
- Other Parameters
RREP No repeat detected
RSAPS Statistical Analysis of Protein Sequence
RPaircoil Scoring Form Coiled Coils from Paircoils
RMultiCoil Scoring Form Coiled Coils that may dimeric or trimeric
