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| Line 46: |
Line 46: |
| [[Media:oligo_path_double_barrel1.txt|oligo path]]<br> | | [[Media:oligo_path_double_barrel1.txt|oligo path]]<br> |
| [[Media:oligo_tokens.txt|oligo token list]]<br> | | [[Media:oligo_tokens.txt|oligo token list]]<br> |
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| ==Schematics and .AI Files==
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| <gallery>
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| Image:IGEMHarv_dbl_ply_barrel_schematic_TC.gif|Double-Ply Barrel Schematic<br>([[Media:IGEMHarv_dbl_ply_barrel_schematic_TC.ai|ai file]])
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| Image:IGEMHarv_dbl_ply_lid_2D_schematic.gif|Double-Ply Lid 2D Schematic, Plus "Up" & "Down" Points<br>([[Media:IGEMHarv_dbl_ply_lid_schematic.ai|ai file]])
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| Image:IGEMHarv_dbl_ply_barrel_lid_in_out_schem_TC.gif|Double-Ply Barrel and Lid In-Out Schematic<br>([[Media:IGEMHarv_dbl_ply_barrel_in_out_schem_TC.ai|ai file]])
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| Image:IGEMHarv_dbl_ply_barrel_2D_schematic.gif|Double-Ply Barrel 2D Schematic, Plus "In" & "Out" Points & Latch Points & *NUMBERING!*<br>([[Media:IGEMHarv_dbl_ply_barrel_2D_schem.ai|ai file]])
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| Image:IGEMHarv_dbl_ply_lid_barrel_2D_finalschem.gif|Double-Ply Barrel 2D Schematic, Plus Latches, Loops, & Aptamers<br>([[Media:Design_5_barrel_schem.ai|ai file]])
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| </gallery>
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|
| |
| ==Automated schematic==
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| Here's a link to a python file that automatically creates a schematic. Call maked(inf,outf) where inf is a token list and outf is the file you'd like to output to (should be .bmp). It uses a nifty module called pygame. I haven't tried it out on Macs yet. Still, it gives fairly colorful results.
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| [[makeschematic.py| Code]]
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|
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| <gallery>
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| Image:design5barrel.jpg|Design 5 barrel<br>
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|
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| </gallery>
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|
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| ==ASCII Diagrams==
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|
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| *Double-Ply Barrel (42-helix outer barrel)
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| <pre>
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| ... ... 070 068 066 064 ... ...
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| ... 071 069 067 065 063 ...
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|
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| ... 030 000 002 004 062 ...
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| ... 031 029 001 003 005 061 ...
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|
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| ... 032 028 ... ... 006 060 ...
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| 033 027 ... ... ... 007 059
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|
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| 034 026 ... ... ... 008 058
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| 035 025 ... ... ... ... 009 057
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|
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| 036 024 ... ... ... ... 010 056
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| 037 023 ... ... ... 011 055
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|
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| 038 022 ... ... ... 012 054
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| ... 039 021 ... ... 013 053 ...
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|
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| ... 040 020 018 016 014 052 ...
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| ... 041 019 017 015 051 ...
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|
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| ... 042 044 046 048 050 ...
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| ... ... 043 045 047 049 ... ...
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|
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| </pre>
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|
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| *Double-Ply Lid (19 helices long)
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| <pre>
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| ... 000 002 004 006 008 010 012 014 016 ...
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| 037 001 003 005 007 009 011 013 015 017 ...
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|
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| 036 034 032 030 028 026 024 022 020 018 ...
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| ... 035 033 031 029 027 025 023 021 019 ...
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|
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| </pre>
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